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UF6

Bio-Formats toolbox to MATLAB's Java

UF6
Nov 10th, 2023
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MatLab 1.17 KB | Source Code | 0 0
  1. try
  2.     % Add the Bio-Formats toolbox to MATLAB's Java classpath
  3.     bioFormatsPath = 'C:\Users\rocke\Downloads\MathWorks\bfmatlab\bfmatlab\bfmatlabbioformats_package.jar';
  4.     javaaddpath(bioFormatsPath);
  5.    
  6.     % Use Bio-Formats to read the OME file
  7.     disp('Attempting to read OME file...');
  8.     data = bfopen(omeFilePath);
  9.     disp('OME file read successfully.');
  10.  
  11.     % Extract the image data from the Bio-Formats structure
  12.     omeImage = data{1}{1};
  13.  
  14.     % Define the desired width and height for the resized image
  15.     desiredWidth = 800;
  16.     desiredHeight = 600;
  17.  
  18.     % Resize the image to the desired dimensions
  19.     resizedImage = imresize(omeImage, [desiredHeight, desiredWidth]);
  20.  
  21.     % Specify the output TIFF file path
  22.     tiffFilePath = 'K:\SlideScans_AstroPath_Test\HumanTB\newfile.tif';
  23.  
  24.     % Save the resized image as a TIFF file
  25.     imwrite(resizedImage, tiffFilePath);
  26.    
  27.     % Display a success message
  28.     fprintf('OME file converted to TIFF: %s\n', tiffFilePath);
  29.    
  30. catch exception
  31.     % Handle any errors that may occur during the process
  32.     fprintf('An error occurred: %s\n', exception.message);
  33.     disp(exception.getReport);
  34. end
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