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Ubuntu Linux 14.0.4 - YAP Buling issue

logicmoo
Feb 24th, 2016
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  1. root@gitlab:/devel/GITHUB/yap-6.3# git status
  2. On branch master
  3. Your branch is up-to-date with 'origin/master'.
  4.  
  5. nothing to commit, working directory clean
  6. root@gitlab:/devel/GITHUB/yap-6.3# git remote -v
  7. origin  https://github.com/vscosta/yap-6.3 (fetch)
  8. origin  https://github.com/vscosta/yap-6.3 (push)
  9. root@gitlab:/devel/GITHUB/yap-6.3# mkdir ../build-yap-6.3
  10. root@gitlab:/devel/GITHUB/yap-6.3# cd ../build-yap-6.3/
  11. root@gitlab:/devel/GITHUB/build-yap-6.3# cmake -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=/usr/local /devel/GITHUB/yap-6.3  -G "Eclipse CDT4 - Unix Makefiles"
  12. -- The C compiler identification is GNU 5.3.0
  13. -- The CXX compiler identification is GNU 5.3.0
  14. -- Could not determine Eclipse version, assuming at least 3.6 (Helios). Adjust CMAKE_ECLIPSE_VERSION if this is wrong.
  15. -- Check for working C compiler: /usr/bin/cc
  16. -- Check for working C compiler: /usr/bin/cc -- works
  17. -- Detecting C compiler ABI info
  18. -- Detecting C compiler ABI info - done
  19. -- Detecting C compile features
  20. -- Detecting C compile features - done
  21. -- Check for working CXX compiler: /usr/bin/c++
  22. -- Check for working CXX compiler: /usr/bin/c++ -- works
  23. -- Detecting CXX compiler ABI info
  24. -- Detecting CXX compiler ABI info - done
  25. -- Detecting CXX compile features
  26. -- Detecting CXX compile features - done
  27. -- Building YAP version
  28. -- Check for signal return type in <signal.h>
  29. -- Check for signal handler return type type void  - found
  30. -- Checking whether system has ANSI C header files
  31. -- Looking for 4 include files stdlib.h, ..., float.h
  32. -- Looking for 4 include files stdlib.h, ..., float.h - found
  33. -- Performing Test memchrExists
  34. -- Performing Test memchrExists - Success
  35. -- Performing Test freeExists
  36. -- Performing Test freeExists - Success
  37. -- Check for whether ctype.h macros work on characters with the
  38.    high bit set.
  39. -- High-bit characters - work
  40. -- ANSI C header files - found
  41. -- Looking for alloca.h
  42. -- Looking for alloca.h - found
  43. -- Looking for apache2/util_md5.h
  44. -- Looking for apache2/util_md5.h - not found
  45. -- Looking for apr-1/apr_md5.h
  46. -- Looking for apr-1/apr_md5.h - not found
  47. -- Looking for arpa/inet.h
  48. -- Looking for arpa/inet.h - found
  49. -- Looking for include file ctype.h
  50. -- Looking for include file ctype.h - found
  51. -- Looking for direct.h
  52. -- Looking for direct.h - not found
  53. -- Looking for dirent.h
  54. -- Looking for dirent.h - found
  55. -- Looking for dlfcn.h
  56. -- Looking for dlfcn.h - found
  57. -- Looking for errno.h
  58. -- Looking for errno.h - found
  59. -- Looking for execinfo.h
  60. -- Looking for execinfo.h - found
  61. -- Looking for fcntl.h
  62. -- Looking for fcntl.h - found
  63. -- Looking for fenv.h
  64. -- Looking for fenv.h - found
  65. -- Looking for include file fmemopen.h
  66. -- Looking for include file fmemopen.h - not found
  67. -- Looking for fpu_control.h
  68. -- Looking for fpu_control.h - found
  69. -- Looking for gettid
  70. -- Looking for gettid - not found
  71. -- Looking for SYS_gettid
  72. -- Looking for SYS_gettid - found
  73. -- Looking for glob.h
  74. -- Looking for glob.h - found
  75. -- Looking for ieeefp.h
  76. -- Looking for ieeefp.h - not found
  77. -- Looking for inttypes.h
  78. -- Looking for inttypes.h - found
  79. -- Looking for io.h
  80. -- Looking for io.h - not found
  81. -- Looking for libgen.h
  82. -- Looking for libgen.h - found
  83. -- Looking for LibLoaderAPI.h
  84. -- Looking for LibLoaderAPI.h - not found
  85. -- Looking for limits.h
  86. -- Looking for limits.h - found
  87. -- Looking for locale.h
  88. -- Looking for locale.h - found
  89. -- Looking for mach-o/dyld.h
  90. -- Looking for mach-o/dyld.h - not found
  91. -- Looking for malloc.h
  92. -- Looking for malloc.h - found
  93. -- Looking for math.h
  94. -- Looking for math.h - found
  95. -- Looking for memory.h
  96. -- Looking for memory.h - found
  97. -- Looking for mpe.h
  98. -- Looking for mpe.h - not found
  99. -- Looking for mpi.h
  100. -- Looking for mpi.h - not found
  101. -- Looking for mysql/mysql.h
  102. -- Looking for mysql/mysql.h - found
  103. -- Looking for netdb.h
  104. -- Looking for netdb.h - found
  105. -- Looking for netinet/in.h
  106. -- Looking for netinet/in.h - found
  107. -- Looking for netinet/tcp.h
  108. -- Looking for netinet/tcp.h - found
  109. -- Looking for pthread.h
  110. -- Looking for pthread.h - found
  111. -- Looking for pwd.h
  112. -- Looking for pwd.h - found
  113. -- Looking for regex.h
  114. -- Looking for regex.h - found
  115. -- Looking for setjmp.h
  116. -- Looking for setjmp.h - found
  117. -- Looking for shlobj.h
  118. -- Looking for shlobj.h - not found
  119. -- Looking for siginfo.h
  120. -- Looking for siginfo.h - not found
  121. -- Looking for signal.h
  122. -- Looking for signal.h - found
  123. -- Looking for sqlite3.h
  124. -- Looking for sqlite3.h - found
  125. -- Looking for sql.h
  126. -- Looking for sql.h - found
  127. -- Looking for stdbool.h
  128. -- Looking for stdbool.h - found
  129. -- Looking for stdint.h
  130. -- Looking for stdint.h - found
  131. -- Looking for strings.h
  132. -- Looking for strings.h - found
  133. -- Looking for stropts.h
  134. -- Looking for stropts.h - found
  135. -- Looking for syslog.h
  136. -- Looking for syslog.h - found
  137. -- Looking for sys/conf.h
  138. -- Looking for sys/conf.h - not found
  139. -- Looking for sys/dir.h
  140. -- Looking for sys/dir.h - found
  141. -- Looking for sys/file.h
  142. -- Looking for sys/file.h - found
  143. -- Looking for sys/mman.h
  144. -- Looking for sys/mman.h - found
  145. -- Looking for sys/ndir.h
  146. -- Looking for sys/ndir.h - not found
  147. -- Looking for sys/param.h
  148. -- Looking for sys/param.h - found
  149. -- Looking for sys/resource.h
  150. -- Looking for sys/resource.h - found
  151. -- Looking for sys/select.h
  152. -- Looking for sys/select.h - found
  153. -- Looking for sys/shm.h
  154. -- Looking for sys/shm.h - found
  155. -- Looking for sys/socket.h
  156. -- Looking for sys/socket.h - found
  157. -- Looking for sys/stat.h
  158. -- Looking for sys/stat.h - found
  159. -- Looking for sys/syscall.h
  160. -- Looking for sys/syscall.h - found
  161. -- Looking for sys/times.h
  162. -- Looking for sys/times.h - found
  163. -- Looking for sys/time.h
  164. -- Looking for sys/time.h - found
  165. -- Looking for sys/types.h
  166. -- Looking for sys/types.h - found
  167. -- Looking for sys/ucontext.h
  168. -- Looking for sys/ucontext.h - found
  169. -- Looking for sys/un.h
  170. -- Looking for sys/un.h - found
  171. -- Looking for sys/wait.h
  172. -- Looking for sys/wait.h - found
  173. -- Looking for time.h
  174. -- Looking for time.h - found
  175. -- Looking for ucontext.h
  176. -- Looking for ucontext.h - found
  177. -- Looking for unistd.h
  178. -- Looking for unistd.h - found
  179. -- Looking for util.h
  180. -- Looking for util.h - not found
  181. -- Looking for utime.h
  182. -- Looking for utime.h - found
  183. -- Looking for wchar.h
  184. -- Looking for wchar.h - found
  185. -- Looking for wctype.h
  186. -- Looking for wctype.h - found
  187. -- Looking for windef.h
  188. -- Looking for windef.h - not found
  189. -- Looking for windows.h
  190. -- Looking for windows.h - not found
  191. -- Looking for winsock2.h
  192. -- Looking for winsock2.h - not found
  193. -- Looking for winsock.h
  194. -- Looking for winsock.h - not found
  195. -- Looking for wordexp.h
  196. -- Looking for wordexp.h - found
  197. -- Looking for stddef.h
  198. -- Looking for stddef.h - found
  199. -- Check size of short int
  200. -- Check size of short int - done
  201. -- Check size of int
  202. -- Check size of int - done
  203. -- Check size of long int
  204. -- Check size of long int - done
  205. -- Check size of long int
  206. -- Check size of long int - done
  207. -- Check size of long long int
  208. -- Check size of long long int - done
  209. -- Check size of long long int
  210. -- Check size of long long int - done
  211. -- Check size of float
  212. -- Check size of float - done
  213. -- Check size of double
  214. -- Check size of double - done
  215. -- Check size of void *
  216. -- Check size of void * - done
  217. -- Check size of void *
  218. -- Check size of void * - done
  219. -- Check size of int *
  220. -- Check size of int * - done
  221. -- Check size of uintptr_t
  222. -- Check size of uintptr_t - done
  223. -- Check size of wchar_t
  224. -- Check size of wchar_t - done
  225. -- Looking for main in android
  226. -- Looking for main in android - not found
  227. -- Looking for logf in m
  228. -- Looking for logf in m - found
  229. -- Looking for dlopen in dl
  230. -- Looking for dlopen in dl - found
  231. -- Looking for Judy1Set in judy
  232. -- Looking for Judy1Set in judy - not found
  233. -- Looking for main in log
  234. -- Looking for main in log - not found
  235. -- Looking for main in unicode
  236. -- Looking for main in unicode - not found
  237. -- Looking for main in xnet
  238. -- Looking for main in xnet - not found
  239. -- Looking for _NSGetEnviron
  240. -- Looking for _NSGetEnviron - not found
  241. -- Looking for access
  242. -- Looking for access - found
  243. -- Looking for acosh
  244. -- Looking for acosh - not found
  245. -- Looking for asinh
  246. -- Looking for asinh - not found
  247. -- Looking for atanh
  248. -- Looking for atanh - not found
  249. -- Looking for backtrace
  250. -- Looking for backtrace - found
  251. -- Looking for basename
  252. -- Looking for basename - found
  253. -- Looking for chdir
  254. -- Looking for chdir - found
  255. -- Looking for _chsize_s
  256. -- Looking for _chsize_s - not found
  257. -- Looking for clock
  258. -- Looking for clock - found
  259. -- Looking for clock_gettime
  260. -- Looking for clock_gettime - found
  261. -- Looking for ctime
  262. -- Looking for ctime - found
  263. -- Looking for dup2
  264. -- Looking for dup2 - found
  265. -- Looking for dynarray
  266. -- Looking for dynarray - not found
  267. -- Looking for environ
  268. -- Looking for environ - found
  269. -- Looking for erf
  270. -- Looking for erf - not found
  271. -- Looking for feclearexcept
  272. -- Looking for feclearexcept - not found
  273. -- Looking for feenableexcept
  274. -- Looking for feenableexcept - not found
  275. -- Looking for fesetexceptflag
  276. -- Looking for fesetexceptflag - not found
  277. -- Looking for fesetround
  278. -- Looking for fesetround - not found
  279. -- Looking for fesettrapenable
  280. -- Looking for fesettrapenable - not found
  281. -- Looking for fetestexcept
  282. -- Looking for fetestexcept - not found
  283. -- Looking for ffsl
  284. -- Looking for ffsl - not found
  285. -- Looking for ffsll
  286. -- Looking for ffsll - not found
  287. -- Looking for __builtin_ffsll
  288. -- Looking for __builtin_ffsll - not found
  289. -- Looking for fgetpos
  290. -- Looking for fgetpos - found
  291. -- Looking for finite
  292. -- Looking for finite - found
  293. -- Looking for flsl
  294. -- Looking for flsl - not found
  295. -- Looking for flsll
  296. -- Looking for flsll - not found
  297. -- Looking for fmemopen
  298. -- Looking for fmemopen - found
  299. -- Looking for fpclass
  300. -- Looking for fpclass - not found
  301. -- Looking for ftime
  302. -- Looking for ftime - found
  303. -- Looking for ftruncate
  304. -- Looking for ftruncate - found
  305. -- Looking for funopen
  306. -- Looking for funopen - not found
  307. -- Looking for gcc
  308. -- Looking for gcc - not found
  309. -- Looking for getcwd
  310. -- Looking for getcwd - found
  311. -- Looking for getenv
  312. -- Looking for getenv - found
  313. -- Looking for getexecname
  314. -- Looking for getexecname - not found
  315. -- Looking for gethostbyname
  316. -- Looking for gethostbyname - found
  317. -- Looking for gethostent
  318. -- Looking for gethostent - found
  319. -- Looking for gethostid
  320. -- Looking for gethostid - found
  321. -- Looking for gethostname
  322. -- Looking for gethostname - found
  323. -- Looking for gethrtime
  324. -- Looking for gethrtime - not found
  325. -- Looking for getpagesize
  326. -- Looking for getpagesize - found
  327. -- Looking for getpid
  328. -- Looking for getpid - found
  329. -- Looking for getpwnam
  330. -- Looking for getpwnam - found
  331. -- Looking for getrlimit
  332. -- Looking for getrlimit - found
  333. -- Looking for getrusage
  334. -- Looking for getrusage - found
  335. -- Looking for gettimeofday
  336. -- Looking for gettimeofday - found
  337. -- Looking for getwd
  338. -- Looking for getwd - found
  339. -- Looking for glob
  340. -- Looking for glob - found
  341. -- Looking for gmtime
  342. -- Looking for gmtime - found
  343. -- Looking for h_errno
  344. -- Looking for h_errno - not found
  345. -- Looking for isatty
  346. -- Looking for isatty - found
  347. -- Looking for isfinite
  348. -- Looking for isfinite - not found
  349. -- Looking for isinf
  350. -- Looking for isinf - found
  351. -- Looking for isnan
  352. -- Looking for isnan - found
  353. -- Looking for kill
  354. -- Looking for kill - found
  355. -- Looking for labs
  356. -- Looking for labs - found
  357. -- Looking for link
  358. -- Looking for link - found
  359. -- Looking for localtime
  360. -- Looking for localtime - found
  361. -- Looking for lstat
  362. -- Looking for lstat - found
  363. -- Looking for mallinfo
  364. -- Looking for mallinfo - not found
  365. -- Looking for mbscoll
  366. -- Looking for mbscoll - not found
  367. -- Looking for mbscasecoll
  368. -- Looking for mbscasecoll - not found
  369. -- Looking for mbsnrtowcs
  370. -- Looking for mbsnrtowcs - found
  371. -- Looking for memcpy
  372. -- Looking for memcpy - found
  373. -- Looking for memmove
  374. -- Looking for memmove - found
  375. -- Looking for mkstemp
  376. -- Looking for mkstemp - found
  377. -- Looking for mktemp
  378. -- Looking for mktemp - found
  379. -- Looking for nanosleep
  380. -- Looking for nanosleep - found
  381. -- Looking for mktime
  382. -- Looking for mktime - found
  383. -- Looking for opendir
  384. -- Looking for opendir - found
  385. -- Looking for open_memstream
  386. -- Looking for open_memstream - found
  387. -- Looking for putenv
  388. -- Looking for putenv - found
  389. -- Looking for rand
  390. -- Looking for rand - found
  391. -- Looking for random
  392. -- Looking for random - found
  393. -- Looking for readlink
  394. -- Looking for readlink - found
  395. -- Looking for realpath
  396. -- Looking for realpath - found
  397. -- Looking for regexec
  398. -- Looking for regexec - found
  399. -- Looking for rename
  400. -- Looking for rename - found
  401. -- Looking for restartable_syscalls
  402. -- Looking for restartable_syscalls - not found
  403. -- Looking for rint
  404. -- Looking for rint - not found
  405. -- Looking for sbrk
  406. -- Looking for sbrk - found
  407. -- Looking for select
  408. -- Looking for select - found
  409. -- Looking for setbuf
  410. -- Looking for setbuf - found
  411. -- Looking for setitimer
  412. -- Looking for setitimer - found
  413. -- Looking for setlinebuf
  414. -- Looking for setlinebuf - found
  415. -- Looking for setlocale
  416. -- Looking for setlocale - found
  417. -- Looking for setsid
  418. -- Looking for setsid - found
  419. -- Looking for shmat
  420. -- Looking for shmat - found
  421. -- Looking for sigaction
  422. -- Looking for sigaction - found
  423. -- Looking for SIGFPE
  424. -- Looking for SIGFPE - found
  425. -- Looking for siggetmask
  426. -- Looking for siggetmask - found
  427. -- Looking for SIGINFO
  428. -- Looking for SIGINFO - not found
  429. -- Looking for siginterrupt
  430. -- Looking for siginterrupt - found
  431. -- Looking for signal
  432. -- Looking for signal - found
  433. -- Looking for sigprocmask
  434. -- Looking for sigprocmask - found
  435. -- Looking for SIGPROF
  436. -- Looking for SIGPROF - found
  437. -- Looking for SIGSEGV
  438. -- Looking for SIGSEGV - found
  439. -- Looking for sigsetjmp
  440. -- Looking for sigsetjmp - found
  441. -- Looking for sleep
  442. -- Looking for sleep - found
  443. -- Looking for snprintf
  444. -- Looking for snprintf - found
  445. -- Looking for socket
  446. -- Looking for socket - found
  447. -- Looking for socklen_t
  448. -- Looking for socklen_t - not found
  449. -- Looking for sqllen
  450. -- Looking for sqllen - not found
  451. -- Looking for sqlulen
  452. -- Looking for sqlulen - not found
  453. -- Looking for srand
  454. -- Looking for srand - found
  455. -- Looking for srand
  456. -- Looking for srand - found
  457. -- Looking for srandom
  458. -- Looking for srandom - found
  459. -- Looking for ssize_t
  460. -- Looking for ssize_t - not found
  461. -- Looking for stat
  462. -- Looking for stat - found
  463. -- Looking for strcasecmp
  464. -- Looking for strcasecmp - found
  465. -- Looking for strcasestr
  466. -- Looking for strcasestr - found
  467. -- Looking for strchr
  468. -- Looking for strchr - found
  469. -- Looking for strerror
  470. -- Looking for strerror - found
  471. -- Looking for stricmp
  472. -- Looking for stricmp - not found
  473. -- Looking for strlwr
  474. -- Looking for strlwr - not found
  475. -- Looking for strncasecmp
  476. -- Looking for strncasecmp - found
  477. -- Looking for strncat
  478. -- Looking for strncat - found
  479. -- Looking for strncpy
  480. -- Looking for strncpy - found
  481. -- Looking for strnlen
  482. -- Looking for strnlen - found
  483. -- Looking for strtod
  484. -- Looking for strtod - found
  485. -- Looking for struct_time_tm_gmtoff
  486. -- Looking for struct_time_tm_gmtoff - not found
  487. -- Looking for system
  488. -- Looking for system - found
  489. -- Looking for time
  490. -- Looking for time - found
  491. -- Looking for timegm
  492. -- Looking for timegm - found
  493. -- Looking for times
  494. -- Looking for times - found
  495. -- Looking for timezone
  496. -- Looking for timezone - found
  497. -- Looking for tmpnam
  498. -- Looking for tmpnam - found
  499. -- Looking for ttyname
  500. -- Looking for ttyname - found
  501. -- Looking for usleep
  502. -- Looking for usleep - found
  503. -- Looking for utime
  504. -- Looking for utime - found
  505. -- Looking for vfork
  506. -- Looking for vfork - found
  507. -- Looking for vsnprintf
  508. -- Looking for vsnprintf - found
  509. -- Looking for waitpid
  510. -- Looking for waitpid - found
  511. -- Looking for wcsdup
  512. -- Looking for wcsdup - found
  513. -- Looking for wcsnlen
  514. -- Looking for wcsnlen - found
  515. -- Looking for wordexp
  516. -- Looking for wordexp - found
  517. -- Looking for _bool
  518. -- Looking for _bool - not found
  519. -- Looking for __NR_gettid
  520. -- Looking for __NR_gettid - found
  521. -- Looking for gettid
  522. -- Looking for gettid - not found
  523. -- Running with CMAKE_C_FLAGS
  524. -- Found GMP: /usr/include/x86_64-linux-gnu
  525. -- Found MySQL: /usr/lib/x86_64-linux-gnu/libmysqlclient.so
  526. -- Found PostgreSQL: /usr/lib/libpq.so (found version "9.3.11")
  527. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
  528. -- checking for module 'sqlite3'
  529. --   found sqlite3, version 3.8.2
  530. -- Found Sqlite3: /usr/lib/x86_64-linux-gnu/libsqlite3.so
  531. -- Found readline library
  532. -- Looking for readline in readline
  533. -- Looking for readline in readline - found
  534. -- Looking for include files stdio.h, readline/readline.h
  535. -- Looking for include files stdio.h, readline/readline.h - found
  536. -- Looking for include files stdio.h, readline/history.h
  537. -- Looking for include files stdio.h, readline/history.h - found
  538. -- Looking for add_history
  539. -- Looking for add_history - found
  540. -- Looking for rl_begin_undo_group
  541. -- Looking for rl_begin_undo_group - found
  542. -- Looking for rl_clear_pending_input
  543. -- Looking for rl_clear_pending_input - found
  544. -- Looking for rl_discard_argument
  545. -- Looking for rl_discard_argument - found
  546. -- Looking for rl_filename_completion_function
  547. -- Looking for rl_filename_completion_function - found
  548. -- Looking for rl_free_line_state
  549. -- Looking for rl_free_line_state - found
  550. -- Looking for rl_insert_close
  551. -- Looking for rl_insert_close - found
  552. -- Looking for rl_reset_after_signal
  553. -- Looking for rl_reset_after_signal - found
  554. -- Looking for rl_set_keyboard_input_timeout
  555. -- Looking for rl_set_keyboard_input_timeout - found
  556. -- Looking for rl_set_prompt
  557. -- Looking for rl_set_prompt - found
  558. -- Looking for rl_catch_signals
  559. -- Looking for rl_catch_signals - found
  560. -- Looking for rl_done
  561. -- Looking for rl_done - found
  562. -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so;/usr/lib/x86_64-linux-gnu/libcrypto.so (found version "1.0.1f")
  563. -- Looking for openssl/ripemd.h
  564. -- Looking for openssl/ripemd.h - found
  565. -- Looking for openssl/md5.h
  566. -- Looking for openssl/md5.h - found
  567. -- Looking for crypt in crypt
  568. -- Looking for crypt in crypt - found
  569. -- Found R: /usr/share/R/include
  570. -- Looking for include file R.h
  571. -- Looking for include file R.h - found
  572. -- Looking for include files R.h, Rembedded.h
  573. -- Looking for include files R.h, Rembedded.h - found
  574. -- Looking for include files Rembedded.h, Rinterface.h
  575. -- Looking for include files Rembedded.h, Rinterface.h - found
  576. -- Found PythonInterp: /usr/bin/python (found version "2.7.6")
  577. -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.6")
  578. -- Found Java: /usr/bin/java (found version "1.8.0.72")
  579. -- Found Java: /usr/bin/java (found version "1.8.0.72")
  580. -- Found JNI: /usr/lib/jvm/default-java/jre/lib/amd64/libjawt.so
  581. -- Found SWIG: /usr/bin/swig2.0 (found version "2.0.11")
  582. -- Found Java: /usr/bin/java (found version "1.8.0.72")
  583. -- Found Java: /usr/bin/java (found version "1.8.0.72")
  584. -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.1")
  585. -- Looking for include file libxml2/libxml2.h
  586. -- Looking for include file libxml2/libxml2.h - not found
  587. -- Looking for include file libxml2.h
  588. -- Looking for include file libxml2.h - not found
  589. -- Could NOT find Raptor (missing:  RAPTOR_LIBRARY RAPTOR_INCLUDE_DIR)
  590. -- Found Doxygen: /usr/bin/doxygen (found version "1.8.6")
  591.  
  592. -----------------------------------------------------------------------------
  593. -- The following external packages were located on your system.
  594. -- This installation will have the extra features provided by these packages.
  595. -----------------------------------------------------------------------------
  596.    * libgmp - GNU big integers and rationals
  597.    * MySQL - MYSQL Driver for MYDDAS Data-Base Interface
  598.    * Odbc - ODBC Driver for MYDDAS Data-Base Interface
  599.    * postgres - PostgreSQL Driver for MYDDAS Data-Base Interface
  600.    * Sqlite3 - Sqlite3 Data-Base
  601.    * libreadline - Readline line editing library
  602.    * OpenSLL - Transport Layer Security (TLS) and Secure Sockets Layer (SSL) protocols
  603.    * R - Use R Environment
  604.    * Python - Use Python System
  605.    * Java - Use Java System
  606.    * Swig - Use SWIG Documentation System
  607.    * JNI - Use Java Native Interface
  608.    * RAPTOR - Use XML2 Library
  609.  
  610. -----------------------------------------------------------------------------
  611. -- The following OPTIONAL packages could NOT be located on your system.
  612. -- Consider installing them to enable more features from this software.
  613. -----------------------------------------------------------------------------
  614.    * Threads Support  <http://www.gnu.org/software/threads>
  615.      GNU Threads Library (or similar)
  616.    * matlab  <http://matlab.com>
  617.      MATLAB A Language for Technical Computing
  618.    * libgecode  <http://www.gecode.org>
  619.      Use Generic Constraint Development Environment (GECODE) library
  620.    * Java  <http://www.java.org>
  621.      Use Java System
  622.    * CUDD  <http://vlsi.colorado.edu/~fabio/CUDD/>
  623.      Use CUDD Library
  624.    * RAPTOR  <http://www.r.org>
  625.      Use RAPTOR Library
  626.    * Mpi  <http://www.mpi.org>
  627.      Use Mpi System
  628.  
  629. -----------------------------------------------------------------------------
  630.  
  631. -- Configuring done
  632. -- Generating done
  633. -- Build files have been written to: /devel/GITHUB/build-yap-6.3
  634. root@gitlab:/devel/GITHUB/build-yap-6.3# make
  635. Scanning dependencies of target libswi
  636. [  1%] Building C object library/dialect/swi/fli/CMakeFiles/libswi.dir/swi.c.o
  637. [  1%] Building C object library/dialect/swi/fli/CMakeFiles/libswi.dir/blobs.c.o
  638. [  1%] Built target libswi
  639. Scanning dependencies of target libOPTYap
  640. [  1%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.memory.c.o
  641. [  2%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/opt.init.c.o
  642. [  3%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/opt.preds.c.o
  643. [  3%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.copy_engine.c.o
  644. [  4%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.cow_engine.c.o
  645. [  4%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.sba_engine.c.o
  646. [  5%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.thread_engine.c.o
  647. [  5%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.scheduler.c.o
  648. [  6%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/or.cut.c.o
  649. [  7%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/tab.tries.c.o
  650. In file included from /devel/GITHUB/yap-6.3/OPTYap/tab.tries.c:258:0:
  651. /devel/GITHUB/yap-6.3/OPTYap/tab.tries.h: In function ‘answer_search_global_trie_loop’:
  652. /devel/GITHUB/yap-6.3/OPTYap/tab.tries.h:1329:7: warning: variable ‘in_pair’ set but not used [-Wunused-but-set-variable]
  653.    int in_pair = 0;
  654.        ^
  655. [  7%] Building C object OPTYap/CMakeFiles/libOPTYap.dir/tab.completion.c.o
  656. [  7%] Built target libOPTYap
  657. Scanning dependencies of target utf8proc
  658. [  7%] Building C object utf8proc/CMakeFiles/utf8proc.dir/utf8proc.c.o
  659. Linking C shared library libutf8proc.so
  660. [  7%] Built target utf8proc
  661. Scanning dependencies of target myddas
  662. [  7%] Building C object packages/myddas/CMakeFiles/myddas.dir/myddas_initialization.c.o
  663. [  8%] Building C object packages/myddas/CMakeFiles/myddas.dir/myddas_shared.c.o
  664. [  8%] Building C object packages/myddas/CMakeFiles/myddas.dir/myddas_statistics.c.o
  665. [  9%] Building C object packages/myddas/CMakeFiles/myddas.dir/myddas_top_level.c.o
  666. [ 10%] Building C object packages/myddas/CMakeFiles/myddas.dir/myddas_util.c.o
  667. [ 10%] Built target myddas
  668. Scanning dependencies of target libYAPOs
  669. [ 11%] Building C object os/CMakeFiles/libYAPOs.dir/alias.c.o
  670. [ 11%] Building C object os/CMakeFiles/libYAPOs.dir/charsio.c.o
  671. [ 12%] Building C object os/CMakeFiles/libYAPOs.dir/chartypes.c.o
  672. [ 12%] Building C object os/CMakeFiles/libYAPOs.dir/console.c.o
  673. [ 13%] Building C object os/CMakeFiles/libYAPOs.dir/files.c.o
  674. [ 14%] Building C object os/CMakeFiles/libYAPOs.dir/fmemopen.c.o
  675. [ 14%] Building C object os/CMakeFiles/libYAPOs.dir/format.c.o
  676. [ 15%] Building C object os/CMakeFiles/libYAPOs.dir/iopreds.c.o
  677. In file included from /devel/GITHUB/yap-6.3/os/iopreds.c:102:0:
  678. /devel/GITHUB/yap-6.3/os/getw.h: In function ‘get_wchar_from_FILE’:
  679. /devel/GITHUB/yap-6.3/os/getw.h:203:1: warning: control reaches end of non-void function [-Wreturn-type]
  680.  }
  681.  ^
  682. In file included from /devel/GITHUB/yap-6.3/os/iopreds.c:108:0:
  683. /devel/GITHUB/yap-6.3/os/getw.h: In function ‘get_wchar’:
  684. /devel/GITHUB/yap-6.3/os/getw.h:203:1: warning: control reaches end of non-void function [-Wreturn-type]
  685.  }
  686.  ^
  687. [ 15%] Building C object os/CMakeFiles/libYAPOs.dir/mem.c.o
  688. [ 16%] Building C object os/CMakeFiles/libYAPOs.dir/open_memstream.c.o
  689. [ 16%] Building C object os/CMakeFiles/libYAPOs.dir/pipes.c.o
  690. [ 17%] Building C object os/CMakeFiles/libYAPOs.dir/readline.c.o
  691. [ 18%] Building C object os/CMakeFiles/libYAPOs.dir/random.c.o
  692. [ 18%] Building C object os/CMakeFiles/libYAPOs.dir/readterm.c.o
  693. [ 19%] Building C object os/CMakeFiles/libYAPOs.dir/readutil.c.o
  694. [ 19%] Building C object os/CMakeFiles/libYAPOs.dir/sig.c.o
  695. [ 20%] Building C object os/CMakeFiles/libYAPOs.dir/sockets.c.o
  696. [ 21%] Building C object os/CMakeFiles/libYAPOs.dir/streams.c.o
  697. [ 21%] Building C object os/CMakeFiles/libYAPOs.dir/sysbits.c.o
  698. [ 22%] Building C object os/CMakeFiles/libYAPOs.dir/time.c.o
  699. [ 22%] Building C object os/CMakeFiles/libYAPOs.dir/writeterm.c.o
  700. [ 23%] Building C object os/CMakeFiles/libYAPOs.dir/ypsocks.c.o
  701. [ 23%] Building C object os/CMakeFiles/libYAPOs.dir/ypstdio.c.o
  702. [ 23%] Built target libYAPOs
  703. Scanning dependencies of target libYap
  704. [ 24%] Building C object CMakeFiles/libYap.dir/C/absmi.c.o
  705. [ 25%] Building C object CMakeFiles/libYap.dir/C/agc.c.o
  706. [ 25%] Building C object CMakeFiles/libYap.dir/C/adtdefs.c.o
  707. [ 26%] Building C object CMakeFiles/libYap.dir/C/alloc.c.o
  708. [ 26%] Building C object CMakeFiles/libYap.dir/C/amasm.c.o
  709. [ 27%] Building C object CMakeFiles/libYap.dir/C/analyst.c.o
  710. [ 27%] Building C object CMakeFiles/libYap.dir/C/args.c.o
  711. [ 28%] Building C object CMakeFiles/libYap.dir/C/arrays.c.o
  712. [ 29%] Building C object CMakeFiles/libYap.dir/C/arith0.c.o
  713. [ 29%] Building C object CMakeFiles/libYap.dir/C/arith1.c.o
  714. [ 30%] Building C object CMakeFiles/libYap.dir/C/arith2.c.o
  715. [ 30%] Building C object CMakeFiles/libYap.dir/C/atomic.c.o
  716. [ 31%] Building C object CMakeFiles/libYap.dir/C/attvar.c.o
  717. [ 32%] Building C object CMakeFiles/libYap.dir/C/bignum.c.o
  718. [ 32%] Building C object CMakeFiles/libYap.dir/C/bb.c.o
  719. [ 33%] Building C object CMakeFiles/libYap.dir/C/blobs.c.o
  720. [ 33%] Building C object CMakeFiles/libYap.dir/C/cdmgr.c.o
  721. [ 34%] Building C object CMakeFiles/libYap.dir/C/cmppreds.c.o
  722. [ 34%] Building C object CMakeFiles/libYap.dir/C/compiler.c.o
  723. [ 35%] Building C object CMakeFiles/libYap.dir/C/computils.c.o
  724. [ 36%] Building C object CMakeFiles/libYap.dir/C/corout.c.o
  725. [ 36%] Building C object CMakeFiles/libYap.dir/C/cut_c.c.o
  726. [ 37%] Building C object CMakeFiles/libYap.dir/C/dbase.c.o
  727. [ 37%] Building C object CMakeFiles/libYap.dir/C/dlmalloc.c.o
  728. [ 38%] Building C object CMakeFiles/libYap.dir/C/errors.c.o
  729. /devel/GITHUB/yap-6.3/C/errors.c: In function ‘Yap_PrintPredName’:
  730. /devel/GITHUB/yap-6.3/C/errors.c:87:14: warning: format ‘%llx’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘pred_flags_t {aka long unsigned int}’ [-Wformat=]
  731.    sprintf(s, "   %llx\n", ap->PredFlags);
  732.               ^
  733. [ 38%] Building C object CMakeFiles/libYap.dir/C/eval.c.o
  734. [ 39%] Building C object CMakeFiles/libYap.dir/C/exec.c.o
  735. [ 40%] Building C object CMakeFiles/libYap.dir/C/exo.c.o
  736. [ 40%] Building C object CMakeFiles/libYap.dir/C/exo_udi.c.o
  737. [ 41%] Building C object CMakeFiles/libYap.dir/C/flags.c.o
  738. In file included from /devel/GITHUB/yap-6.3/H/generated/h0struct.h:86:0,
  739.                  from /devel/GITHUB/yap-6.3/H/YapHeap.h:185,
  740.                  from /devel/GITHUB/yap-6.3/H/Yap.h:776,
  741.                  from /devel/GITHUB/yap-6.3/C/flags.c:27:
  742. /devel/GITHUB/yap-6.3/C/flags.c: In function ‘Yap_UnknownFlag’:
  743. /devel/GITHUB/yap-6.3/H/generated/tatoms.h:1185:18: warning: passing argument 1 of ‘Yap_GetModuleEntry’ makes integer from pointer without a cast [-Wint-conversion]
  744.  #define AtomUser Yap_heap_regs->AtomUser_
  745.                   ^
  746. /devel/GITHUB/yap-6.3/C/flags.c:1022:30: note: in expansion of macro ‘AtomUser’
  747.       fv = Yap_GetModuleEntry(AtomUser);
  748.                               ^
  749. In file included from /devel/GITHUB/yap-6.3/H/Yap.h:440:0,
  750.                  from /devel/GITHUB/yap-6.3/C/flags.c:27:
  751. /devel/GITHUB/yap-6.3/H/Yapproto.h:322:19: note: expected ‘Term {aka long unsigned int}’ but argument is of type ‘Atom {aka struct AtomEntryStruct *}’
  752.  struct mod_entry *Yap_GetModuleEntry(Term tmod);
  753.                    ^
  754. [ 41%] Building C object CMakeFiles/libYap.dir/C/globals.c.o
  755. [ 42%] Building C object CMakeFiles/libYap.dir/C/gmp_support.c.o
  756. [ 43%] Building C object CMakeFiles/libYap.dir/C/gprof.c.o
  757. [ 43%] Building C object CMakeFiles/libYap.dir/C/grow.c.o
  758. [ 44%] Building C object CMakeFiles/libYap.dir/C/heapgc.c.o
  759. [ 44%] Building C object CMakeFiles/libYap.dir/C/index.c.o
  760. [ 45%] Building C object CMakeFiles/libYap.dir/C/init.c.o
  761. [ 45%] Building C object CMakeFiles/libYap.dir/C/inlines.c.o
  762. [ 46%] Building C object CMakeFiles/libYap.dir/C/depth_bound.c.o
  763. [ 47%] Building C object CMakeFiles/libYap.dir/C/mavar.c.o
  764. [ 47%] Building C object CMakeFiles/libYap.dir/C/modules.c.o
  765. [ 48%] Building C object CMakeFiles/libYap.dir/C/other.c.o
  766. [ 48%] Building C object CMakeFiles/libYap.dir/C/parser.c.o
  767. [ 49%] Building C object CMakeFiles/libYap.dir/C/qlyr.c.o
  768. /devel/GITHUB/yap-6.3/C/qlyr.c: In function ‘Yap_Restore’:
  769. /devel/GITHUB/yap-6.3/C/qlyr.c:1171:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  770.    GLOBAL_RestoreFile = s;
  771.                       ^
  772. [ 49%] Building C object CMakeFiles/libYap.dir/C/qlyw.c.o
  773. [ 50%] Building C object CMakeFiles/libYap.dir/C/range.c.o
  774. [ 51%] Building C object CMakeFiles/libYap.dir/C/save.c.o
  775. [ 51%] Building C object CMakeFiles/libYap.dir/C/scanner.c.o
  776. [ 52%] Building C object CMakeFiles/libYap.dir/C/signals.c.o
  777. [ 52%] Building C object CMakeFiles/libYap.dir/C/sort.c.o
  778. [ 53%] Building C object CMakeFiles/libYap.dir/C/stdpreds.c.o
  779. [ 53%] Building C object CMakeFiles/libYap.dir/C/stack.c.o
  780. [ 54%] Building C object CMakeFiles/libYap.dir/C/text.c.o
  781. [ 55%] Building C object CMakeFiles/libYap.dir/C/threads.c.o
  782. [ 55%] Building C object CMakeFiles/libYap.dir/C/tracer.c.o
  783. [ 56%] Building C object CMakeFiles/libYap.dir/C/unify.c.o
  784. [ 56%] Building C object CMakeFiles/libYap.dir/C/userpreds.c.o
  785. [ 57%] Building C object CMakeFiles/libYap.dir/C/utilpreds.c.o
  786. [ 58%] Building C object CMakeFiles/libYap.dir/C/yap-args.c.o
  787. [ 58%] Building C object CMakeFiles/libYap.dir/C/write.c.o
  788. [ 59%] Building C object CMakeFiles/libYap.dir/C/udi.c.o
  789. [ 59%] Building C object CMakeFiles/libYap.dir/GitSHA1.c.o
  790. [ 60%] Building C object CMakeFiles/libYap.dir/C/load_foreign.c.o
  791. [ 60%] Building C object CMakeFiles/libYap.dir/C/load_dl.c.o
  792. [ 61%] Building C object CMakeFiles/libYap.dir/C/load_dld.c.o
  793. [ 62%] Building C object CMakeFiles/libYap.dir/C/load_dyld.c.o
  794. [ 62%] Building C object CMakeFiles/libYap.dir/C/load_none.c.o
  795. [ 63%] Building C object CMakeFiles/libYap.dir/C/load_aout.c.o
  796. [ 63%] Building C object CMakeFiles/libYap.dir/C/load_aix.c.o
  797. [ 64%] Building C object CMakeFiles/libYap.dir/C/load_dll.c.o
  798. [ 64%] Building C object CMakeFiles/libYap.dir/C/load_shl.c.o
  799. [ 65%] Building C object CMakeFiles/libYap.dir/C/c_interface.c.o
  800. [ 66%] Building C object CMakeFiles/libYap.dir/C/clause_list.c.o
  801. Linking C shared library libYap.so
  802. [ 66%] Built target libYap
  803. Scanning dependencies of target yap-bin
  804. [ 67%] Building C object CMakeFiles/yap-bin.dir/console/yap.c.o
  805. Linking C executable yap
  806. [ 67%] Built target yap-bin
  807. Scanning dependencies of target startup.yss
  808.  % consulting /devel/GITHUB/yap-6.3/pl/init.yap...
  809.  % /devel/GITHUB/yap-6.3/pl/init.yap consulted 0 bytes in 0 msecs
  810. [prolog]
  811. [prolog]
  812.  
  813.  
  814. ^- stuck here
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