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download_PacBio_SRP093160.sh

jhangyu
May 10th, 2018
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  1. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008798
  2. pids="$pids $!"
  3. echo
  4. wait $pids
  5. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008799
  6. pids="$pids $!"
  7. echo
  8. wait $pids
  9. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008800
  10. pids="$pids $!"
  11. echo
  12. wait $pids
  13. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008801
  14. pids="$pids $!"
  15. echo
  16. wait $pids
  17. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008802
  18. pids="$pids $!"
  19. echo
  20. wait $pids
  21. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008803
  22. pids="$pids $!"
  23. echo
  24. wait $pids
  25. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008804
  26. pids="$pids $!"
  27. echo
  28. wait $pids
  29. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008805
  30. pids="$pids $!"
  31. echo
  32. wait $pids
  33. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008806
  34. pids="$pids $!"
  35. echo
  36. wait $pids
  37. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008807
  38. pids="$pids $!"
  39. echo
  40. wait $pids
  41. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008808
  42. pids="$pids $!"
  43. echo
  44. wait $pids
  45. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008809
  46. pids="$pids $!"
  47. echo
  48. wait $pids
  49. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008810
  50. pids="$pids $!"
  51. echo
  52. wait $pids
  53. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008811
  54. pids="$pids $!"
  55. echo
  56. wait $pids
  57. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008812
  58. pids="$pids $!"
  59. echo
  60. wait $pids
  61. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008813
  62. pids="$pids $!"
  63. echo
  64. wait $pids
  65. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008814
  66. pids="$pids $!"
  67. echo
  68. wait $pids
  69. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008815
  70. pids="$pids $!"
  71. echo
  72. wait $pids
  73. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008816
  74. pids="$pids $!"
  75. echo
  76. wait $pids
  77. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008817
  78. pids="$pids $!"
  79. echo
  80. wait $pids
  81. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008818
  82. pids="$pids $!"
  83. echo
  84. wait $pids
  85. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008819
  86. pids="$pids $!"
  87. echo
  88. wait $pids
  89. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008820
  90. pids="$pids $!"
  91. echo
  92. wait $pids
  93. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008821
  94. pids="$pids $!"
  95. echo
  96. wait $pids
  97. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008822
  98. pids="$pids $!"
  99. echo
  100. wait $pids
  101. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008823
  102. pids="$pids $!"
  103. echo
  104. wait $pids
  105. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008824
  106. pids="$pids $!"
  107. echo
  108. wait $pids
  109. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008825
  110. pids="$pids $!"
  111. echo
  112. wait $pids
  113. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008826
  114. pids="$pids $!"
  115. echo
  116. wait $pids
  117. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008827
  118. pids="$pids $!"
  119. echo
  120. wait $pids
  121. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008828
  122. pids="$pids $!"
  123. echo
  124. wait $pids
  125. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008829
  126. pids="$pids $!"
  127. echo
  128. wait $pids
  129. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008830
  130. pids="$pids $!"
  131. echo
  132. wait $pids
  133. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008831
  134. pids="$pids $!"
  135. echo
  136. wait $pids
  137. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008832
  138. pids="$pids $!"
  139. echo
  140. wait $pids
  141. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008833
  142. pids="$pids $!"
  143. echo
  144. wait $pids
  145. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008834
  146. pids="$pids $!"
  147. echo
  148. wait $pids
  149. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008835
  150. pids="$pids $!"
  151. echo
  152. wait $pids
  153. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008836
  154. pids="$pids $!"
  155. echo
  156. wait $pids
  157. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008837
  158. pids="$pids $!"
  159. echo
  160. wait $pids
  161. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008838
  162. pids="$pids $!"
  163. echo
  164. wait $pids
  165. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008839
  166. pids="$pids $!"
  167. echo
  168. wait $pids
  169. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008840
  170. pids="$pids $!"
  171. echo
  172. wait $pids
  173. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008841
  174. pids="$pids $!"
  175. echo
  176. wait $pids
  177. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008842
  178. pids="$pids $!"
  179. echo
  180. wait $pids
  181. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008843
  182. pids="$pids $!"
  183. echo
  184. wait $pids
  185. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008844
  186. pids="$pids $!"
  187. echo
  188. wait $pids
  189. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008845
  190. pids="$pids $!"
  191. echo
  192. wait $pids
  193. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008846
  194. pids="$pids $!"
  195. echo
  196. wait $pids
  197. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008847
  198. pids="$pids $!"
  199. echo
  200. wait $pids
  201. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008848
  202. pids="$pids $!"
  203. echo
  204. wait $pids
  205. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008849
  206. pids="$pids $!"
  207. echo
  208. wait $pids
  209. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008850
  210. pids="$pids $!"
  211. echo
  212. wait $pids
  213. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008851
  214. pids="$pids $!"
  215. echo
  216. wait $pids
  217. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008852
  218. pids="$pids $!"
  219. echo
  220. wait $pids
  221. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008853
  222. pids="$pids $!"
  223. echo
  224. wait $pids
  225. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008854
  226. pids="$pids $!"
  227. echo
  228. wait $pids
  229. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008855
  230. pids="$pids $!"
  231. echo
  232. wait $pids
  233. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008856
  234. pids="$pids $!"
  235. echo
  236. wait $pids
  237. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008857
  238. pids="$pids $!"
  239. echo
  240. wait $pids
  241. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008858
  242. pids="$pids $!"
  243. echo
  244. wait $pids
  245. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008859
  246. pids="$pids $!"
  247. echo
  248. wait $pids
  249. fastq-dump --defline-seq '@$sn[_$rn]/$ri' --defline-qual '+' --outdir '/data/fastq/tilapia/NCBI/SRP093160' SRR5008860
  250. pids="$pids $!"
  251. echo
  252. wait $pids
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