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ProzacR

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ProzacR
May 14th, 2011
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  1. make depend
  2. ln -sf `/usr/bin/g++ -print-file-name=libstdc++.a`
  3. rm -f dependencies_tmp dependencies_tmp.bak
  4. touch dependencies_tmp
  5. makedepend -f dependencies_tmp -Y -I ../../../src/lib ../../../src/lib/*.cpp ../../../src/tests/*.cpp ../../../src/design/*.cpp ../../../src/main/*.cpp ../../../src/split/*.cpp ../../../src/tune/*.cpp
  6. makedepend: warning: ../../../src/lib/cache.cpp, line 23: cannot find include file "algorithm"
  7. not in ../../../src/lib/algorithm
  8. makedepend: warning: ../../../src/lib/cache.cpp, line 32: cannot find include file "boost/archive/text_oarchive.hpp"
  9. not in ../../../src/lib/boost/archive/text_oarchive.hpp
  10. makedepend: warning: ../../../src/lib/cache.cpp, line 33: cannot find include file "boost/archive/text_iarchive.hpp"
  11. not in ../../../src/lib/boost/archive/text_iarchive.hpp
  12. makedepend: warning: ../../../src/lib/cache.cpp, line 38: cannot find include file "boost/serialization/split_member.hpp"
  13. not in ../../../src/lib/boost/serialization/split_member.hpp
  14. makedepend: warning: ../../../src/lib/cache.cpp, line 39: cannot find include file "boost/filesystem/fstream.hpp"
  15. not in ../../../src/lib/boost/filesystem/fstream.hpp
  16. makedepend: warning: ../../../src/lib/cache.cpp, line 40: cannot find include file "boost/static_assert.hpp"
  17. not in ../../../src/lib/boost/static_assert.hpp
  18. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/cache.h, line 26): cannot find include file "string"
  19. not in ../../../src/lib/string
  20. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 26): cannot find include file "cassert"
  21. not in ../../../src/lib/cassert
  22. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 27): cannot find include file "string"
  23. not in ../../../src/lib/string
  24. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 28): cannot find include file "limits"
  25. not in ../../../src/lib/limits
  26. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 29): cannot find include file "utility"
  27. not in ../../../src/lib/utility
  28. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 30): cannot find include file "algorithm"
  29. not in ../../../src/lib/algorithm
  30. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 31): cannot find include file "vector"
  31. not in ../../../src/lib/vector
  32. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 32): cannot find include file "cmath"
  33. not in ../../../src/lib/cmath
  34. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 33): cannot find include file "iostream"
  35. not in ../../../src/lib/iostream
  36. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 34): cannot find include file "fstream"
  37. not in ../../../src/lib/fstream
  38. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 35): cannot find include file "iomanip"
  39. not in ../../../src/lib/iomanip
  40. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 36): cannot find include file "sstream"
  41. not in ../../../src/lib/sstream
  42. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 37): cannot find include file "string"
  43. not in ../../../src/lib/string
  44. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 39): cannot find include file "boost/serialization/vector.hpp"
  45. not in ../../../src/lib/boost/serialization/vector.hpp
  46. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 40): cannot find include file "boost/serialization/base_object.hpp"
  47. not in ../../../src/lib/boost/serialization/base_object.hpp
  48. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/common.h, line 41): cannot find include file "boost/filesystem/path.hpp"
  49. not in ../../../src/lib/boost/filesystem/path.hpp
  50. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/array3d.h, line 26): cannot find include file "exception"
  51. not in ../../../src/lib/exception
  52. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/grid_dim.h, line 26): cannot find include file "boost/array.hpp"
  53. not in ../../../src/lib/boost/array.hpp
  54. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/model.h, line 26): cannot find include file "boost/optional.hpp"
  55. not in ../../../src/lib/boost/optional.hpp
  56. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/file.h, line 26): cannot find include file "boost/filesystem/fstream.hpp"
  57. not in ../../../src/lib/boost/filesystem/fstream.hpp
  58. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/conf.h, line 26): cannot find include file "boost/ptr_container/ptr_vector.hpp"
  59. not in ../../../src/lib/boost/ptr_container/ptr_vector.hpp
  60. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/quaternion.h, line 26): cannot find include file "boost/math/quaternion.hpp"
  61. not in ../../../src/lib/boost/math/quaternion.hpp
  62. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/quaternion.h, line 27): cannot find include file "boost/serialization/split_free.hpp"
  63. not in ../../../src/lib/boost/serialization/split_free.hpp
  64. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/random.h, line 26): cannot find include file "boost/random.hpp"
  65. not in ../../../src/lib/boost/random.hpp
  66. makedepend: warning: ../../../src/lib/cache.cpp (reading ../../../src/lib/matrix.h, line 26): cannot find include file "vector"
  67. not in ../../../src/lib/vector
  68. makedepend: warning: ../../../src/lib/current_weights.cpp (reading ../../../src/lib/terms.h, line 26): cannot find include file "boost/ptr_container/ptr_vector.hpp"
  69. not in ../../../src/lib/boost/ptr_container/ptr_vector.hpp
  70. makedepend: warning: ../../../src/lib/my_pid.cpp, line 26: cannot find include file "unistd.h"
  71. not in ../../../src/lib/unistd.h
  72. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel.h, line 26): cannot find include file "vector"
  73. not in ../../../src/lib/vector
  74. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel.h, line 30): cannot find include file "boost/optional.hpp"
  75. not in ../../../src/lib/boost/optional.hpp
  76. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel.h, line 31): cannot find include file "boost/thread/thread.hpp"
  77. not in ../../../src/lib/boost/thread/thread.hpp
  78. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel.h, line 32): cannot find include file "boost/thread/mutex.hpp"
  79. not in ../../../src/lib/boost/thread/mutex.hpp
  80. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel.h, line 33): cannot find include file "boost/thread/condition.hpp"
  81. not in ../../../src/lib/boost/thread/condition.hpp
  82. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel_progress.h, line 26): cannot find include file "boost/progress.hpp"
  83. not in ../../../src/lib/boost/progress.hpp
  84. makedepend: warning: ../../../src/lib/parallel_mc.cpp (reading ../../../src/lib/parallel_progress.h, line 27): cannot find include file "boost/thread/mutex.hpp"
  85. not in ../../../src/lib/boost/thread/mutex.hpp
  86. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 23: cannot find include file "fstream"
  87. not in ../../../src/lib/fstream
  88. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 24: cannot find include file "sstream"
  89. not in ../../../src/lib/sstream
  90. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 25: cannot find include file "cctype"
  91. not in ../../../src/lib/cctype
  92. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 26: cannot find include file "boost/utility.hpp"
  93. not in ../../../src/lib/boost/utility.hpp
  94. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 27: cannot find include file "boost/optional.hpp"
  95. not in ../../../src/lib/boost/optional.hpp
  96. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 28: cannot find include file "boost/filesystem/fstream.hpp"
  97. not in ../../../src/lib/boost/filesystem/fstream.hpp
  98. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp, line 29: cannot find include file "boost/lexical_cast.hpp"
  99. not in ../../../src/lib/boost/lexical_cast.hpp
  100. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp (reading ../../../src/lib/convert_substring.h, line 26): cannot find include file "cctype"
  101. not in ../../../src/lib/cctype
  102. makedepend: warning: ../../../src/lib/parse_pdbqt.cpp (reading ../../../src/lib/convert_substring.h, line 27): cannot find include file "boost/lexical_cast.hpp"
  103. not in ../../../src/lib/boost/lexical_cast.hpp
  104. makedepend: warning: ../../../src/lib/random.cpp, line 23: cannot find include file "ctime"
  105. not in ../../../src/lib/ctime
  106. makedepend: warning: cannot open "../../../src/tests/*.cpp"
  107. makedepend: warning: cannot open "../../../src/design/*.cpp"
  108. makedepend: warning: ../../../src/main/main.cpp, line 23: cannot find include file "iostream"
  109. not in ../../../src/lib/iostream
  110. makedepend: warning: ../../../src/main/main.cpp, line 24: cannot find include file "string"
  111. not in ../../../src/lib/string
  112. makedepend: warning: ../../../src/main/main.cpp, line 25: cannot find include file "exception"
  113. not in ../../../src/lib/exception
  114. makedepend: warning: ../../../src/main/main.cpp, line 26: cannot find include file "vector"
  115. not in ../../../src/lib/vector
  116. makedepend: warning: ../../../src/main/main.cpp, line 27: cannot find include file "cmath"
  117. not in ../../../src/lib/cmath
  118. makedepend: warning: ../../../src/main/main.cpp, line 28: cannot find include file "boost/program_options.hpp"
  119. not in ../../../src/lib/boost/program_options.hpp
  120. makedepend: warning: ../../../src/main/main.cpp, line 29: cannot find include file "boost/filesystem/fstream.hpp"
  121. not in ../../../src/lib/boost/filesystem/fstream.hpp
  122. makedepend: warning: ../../../src/main/main.cpp, line 30: cannot find include file "boost/filesystem/exception.hpp"
  123. not in ../../../src/lib/boost/filesystem/exception.hpp
  124. makedepend: warning: ../../../src/main/main.cpp, line 31: cannot find include file "boost/filesystem/convenience.hpp"
  125. not in ../../../src/lib/boost/filesystem/convenience.hpp
  126. makedepend: warning: ../../../src/main/main.cpp, line 32: cannot find include file "boost/thread/thread.hpp"
  127. not in ../../../src/lib/boost/thread/thread.hpp
  128. makedepend: warning: ../../../src/main/main.cpp (reading ../../../src/lib/tee.h, line 26): cannot find include file "iostream"
  129. not in ../../../src/lib/iostream
  130. makedepend: warning: ../../../src/main/main.cpp, line 419: unknown directive == "##################################"##############################\n\
  131. makedepend: warning: ../../../src/main/main.cpp, line 420: unknown directive == "# If you used AutoDock Vina in you" work, please cite: #\n\
  132. makedepend: warning: ../../../src/main/main.cpp, line 421: unknown directive == "# " #\n\
  133. makedepend: warning: ../../../src/main/main.cpp, line 422: unknown directive == "# O. Trott, A. J. Olson, " #\n\
  134. makedepend: warning: ../../../src/main/main.cpp, line 423: unknown directive == "# AutoDock Vina: improving the spe"d and accuracy of docking #\n\
  135. makedepend: warning: ../../../src/main/main.cpp, line 424: unknown directive == "# with a new scoring function, eff"cient optimization and #\n\
  136. makedepend: warning: ../../../src/main/main.cpp, line 425: unknown directive == "# multithreading, Journal of Compu"ational Chemistry 31 (2010) #\n\
  137. makedepend: warning: ../../../src/main/main.cpp, line 426: unknown directive == "# 455-461 " #\n\
  138. makedepend: warning: ../../../src/main/main.cpp, line 427: unknown directive == "# " #\n\
  139. makedepend: warning: ../../../src/main/main.cpp, line 428: unknown directive == "# DOI 10.1002/jcc.21334 " #\n\
  140. makedepend: warning: ../../../src/main/main.cpp, line 429: unknown directive == "# " #\n\
  141. makedepend: warning: ../../../src/main/main.cpp, line 430: unknown directive == "# Please see http: "
  142. makedepend: warning: ../../../src/main/main.cpp, line 431: unknown directive == "##################################"##############################\n";
  143. makedepend: warning: ../../../src/split/split.cpp, line 23: cannot find include file "iostream"
  144. not in ../../../src/lib/iostream
  145. makedepend: warning: ../../../src/split/split.cpp, line 24: cannot find include file "string"
  146. not in ../../../src/lib/string
  147. makedepend: warning: ../../../src/split/split.cpp, line 25: cannot find include file "exception"
  148. not in ../../../src/lib/exception
  149. makedepend: warning: ../../../src/split/split.cpp, line 26: cannot find include file "vector"
  150. not in ../../../src/lib/vector
  151. makedepend: warning: ../../../src/split/split.cpp, line 27: cannot find include file "list"
  152. not in ../../../src/lib/list
  153. makedepend: warning: ../../../src/split/split.cpp, line 28: cannot find include file "fstream"
  154. not in ../../../src/lib/fstream
  155. makedepend: warning: ../../../src/split/split.cpp, line 29: cannot find include file "cmath"
  156. not in ../../../src/lib/cmath
  157. makedepend: warning: ../../../src/split/split.cpp, line 30: cannot find include file "boost/program_options.hpp"
  158. not in ../../../src/lib/boost/program_options.hpp
  159. makedepend: warning: ../../../src/split/split.cpp, line 31: cannot find include file "boost/filesystem/fstream.hpp"
  160. not in ../../../src/lib/boost/filesystem/fstream.hpp
  161. makedepend: warning: ../../../src/split/split.cpp, line 32: cannot find include file "boost/filesystem/exception.hpp"
  162. not in ../../../src/lib/boost/filesystem/exception.hpp
  163. makedepend: warning: ../../../src/split/split.cpp, line 33: cannot find include file "boost/filesystem/convenience.hpp"
  164. not in ../../../src/lib/boost/filesystem/convenience.hpp
  165. makedepend: warning: cannot open "../../../src/tune/*.cpp"
  166. sed -e "s/^\.\.\/\.\.\/\.\.\/src\/[a-z]*\//.\//" dependencies_tmp > dependencies
  167. rm -f dependencies_tmp dependencies_tmp.bak
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