jhangyu

download_PacBio_SRP093160_v2.sh

May 18th, 2018
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  1. while read id
  2. do
  3.     fastq-dump --gzip ${id}
  4.     pids="$pids $!"
  5.     echo
  6.     wait $pids
  7. done < download_list.txt
  8.  
  9. @SRR5008811.1 length=72
  10. GATTCTCGTTTTGTCGCTTTCTCCTCCTTCGATCAGCGCGCTTTTATTTCGTTCCTGTTCCCTCGTGTTCGT
  11. +SRR5008811.1 length=72
  12. !"!""""!!!""!"!""""""!"!""""""!#!"""#"!""!""!""!""!!!"!!""""!!"!!"!"!""!
  13. @SRR5008811.2 length=32
  14. TTTTTTCTTTTTTTTTTGTCCTTTCCTTTCCT
  15. +SRR5008811.2 length=32
  16. !!!"!""""!!!!"!"!!!""!"!""!!!!"!
  17. @SRR5008811.3 length=258
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