Circos currently config

# 1.1 MINIMUM CIRCOS CONFIGURATION
#
# This is a 'hello world' Circos tutorial.
#
# Only required configuration elements are included.
#
# Subsequent tutorials in this section build on this example to
# generate a representative image with common elements found in Circos
# figures in the literature.

# Chromosome name, size and color definition
karyotype = data/karyotype/karyotype.nile.tilapia.oreNil3.txt

# The <ideogram> block defines the position, size, labels and other
# properties of the segments on which data are drawn. These segments
# are usually chromosomes, but can be any integer axis.

<ideogram>

<spacing>
# Spacing between ideograms. Suffix "r" denotes a relative value. It
# is relative to circle circumference (e.g. space is 0.5% of
# circumference).
default = 0.005r

# You can increase the spacing between specific ideograms.
<pairwise hsY;hs1>
spacing = 20r
</pairwise>

</spacing>

# Ideogram position, thickness and fill.
#
# Radial position within the image of the ideograms. This value is
# usually relative ("r" suffix).
radius           = 0.90r

# Thickness of ideograms, which can be absolute (e.g. pixels, "p"
# suffix) or relative ("r" suffix). When relative, it is a fraction of
# image radius.
thickness        = 60p

# Ideograms can be drawn as filled, outlined, or both. When filled,
# the color will be taken from the last field in the karyotype file,
# or set by chromosomes_colors. Color names are discussed in
#
# http://www.circos.ca/documentation/tutorials/configuration/configuration_files
#
# When stroke_thickness=0p or if the parameter is missing, the ideogram is
# has no outline and the value of stroke_color is not used.

fill             = yes
stroke_color     = dgrey
stroke_thickness = 0p

## 设定 label 的显示
# 设定是否显示 label 。 label 对应着 karyotype 文件的第 4 列。如果其值为 yes，则必须要有 label_radius 参数来设定 label 的位置，否则会报错并不能生成结果。
show_label       = yes
# 设定 label 的字体
label_font       = futura_condense
# 设定 label 的位置
label_radius     = 1r+90p
# 设定 label 的字体大小
label_size       = 40
# 设定 label 的字体方向，yes 是易于浏览的方向。
label_parallel   = yes

</ideogram>
<plots>
    <plot>
    type        = histogram
    min         = 0
    max         = 20
    file        = plotfileinput.txt
    r0          = 0.3r
    r1          = 0.8r
    color       = vvdblue
    fill_color  = lgreen
    thickness   = 12
    </plot>
</plots>
################################################################
# The remaining content is standard and required. It is imported from
# default files in the Circos distribution.
#
# These should be present in every Circos configuration file and
# overridden as required. To see the content of these files,
# look in etc/ in the Circos distribution.
#
# It's best to include these files using relative paths. This way, the
# files if not found under your current directory will be drawn from
# the Circos distribution.
#
# As always, centralize all your inputs as much as possible.

<image>
# Included from Circos distribution.
<<include etc/image.conf>>
</image>

# RGB/HSV color definitions, color lists, location of fonts, fill
# patterns. Included from Circos distribution.
#
# In older versions of Circos, colors, fonts and patterns were
# included individually. Now, this is done from a central file. Make
# sure that you're not importing these values twice by having
#
# *** DO NOT DO THIS ***
# <colors>
# <<include etc/colors.conf>>
# <colors>
# **********************
<<include etc/colors_fonts_patterns.conf>>

# Debugging, I/O an dother system parameters
# Included from Circos distribution.
<<include etc/housekeeping.conf>>