Install Conda

#install conda, it is recommended to install conda on your home dir
bash https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh

#Add conda channels
conda config --add channels conda-froge
conda config --add channels anaconda
conda config --add channels bioconda

#And you can install packages easily
conda install trinity gatk
conda install bwa bowtie bowtie2 star kallisto hisat2