download from pubmed and calculate score

#!/bin/bash
#download from pubmed and calculate score
#
# VR

while read ID; do
    echo $ID
    wget -O /Data/Sergio_NCI-60_similar_to_metabolites_Data/${ID}.sdf https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/${ID}/record/SDF/\?record_type=2d\&response_type\=save\&response_basename=Structure2D_CID_${ID}
    for file in ~/Sergio_metabolitai/C*.mol; do
    echo $file
    keggid=$(echo $file | cut -d / -f 5)
    babel $file /Data/Sergio_NCI-60_similar_to_metabolites_Data/${ID}.sdf -ofpt -xfFP2 > /Data/Sergio_NCI-60_similar_to_metabolites_Data/${ID}_${keggid%.mol}.log
    done
done < unique_book1.csv