Kosheen

GFA of barcodes

Aug 16th, 2024
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  1. barcode02
  2. H VN:Z:1.0
  3. S edge_1 AAGGATCAGTTCCATACGGAACTGGTCTTTTTGTGTTGCTTGAGAGGATATTTTTTTGATTGCACTTGTTTGATGAACGTGCAGCACTCCAACTCATTT
  4. S edge_2 CTTCTAAAACTAAACAAGACAAAACGTACCGTTAATTCCAGTTTTTATAAAAATCCTATGATACATCATAGGTAGTCAGTCAAACACTGACGAAAAACA
  5. L edge_1 + edge_1 + 0M RC:i:213
  6. L edge_1 - edge_1 - 0M RC:i:118
  7. L edge_2 + edge_2 + 0M RC:i:0
  8. L edge_2 - edge_2 - 0M RC:i:0
  9. P contig_2 edge_2+ *
  10. P contig_1 edge_1+ *
  11.  
  12. barcode03
  13. H VN:Z:1.0
  14. S edge_1 AGAACCACGTCAGAACCTCAAGGCTGCAGGCGGAGGCGCAGCAGCCACACATACCGCCACCACGCCACACCCCCCCAGACCGCGGGTGAGCCTGCGCAA
  15. S edge_2 CCTCGATGATCACGTGGGCATTGGTGCCGCTGACGCCGAACGCCGAGATGCCGGCGCGGCGCGGGCCGCCGCTGTCCGGCCAGGGCCTGGCCTCGGTCA
  16. S edge_3 CGGTCGGTGCTTCGATGATCACGTGGGCGTTCGTCCCGCCGAAGCCGAACGACGACACACCGGCCCGGCGGGGCTCGCCGGTCTCCGGCCACGGGAGGT
  17. S edge_4 CGCCATTGCTAAGGTTAGGAAGACCAGAGAATCCGACAGCACCGCATCGCTAAAGTCAAGAGCGTGCCCGTGCTGGCGGTGCTTTTTTGTAATCGCGGC
  18. L edge_1 + edge_4 - 0M RC:i:17
  19. L edge_1 - edge_4 - 0M RC:i:25
  20. P contig_1 edge_4+,edge_1+,edge_4- *
  21. P contig_2 edge_2+ *
  22. P contig_3 edge_3+ *
  23. P contig_4 edge_4+ *
  24.  
  25. barcode04
  26. H VN:Z:1.0
  27. S edge_1 CGCACGACTTCGCGACGATGGACGAACTCGCCACGATGCACGATGCCGGCTGGGGCGTACTTAGGACCGATGCCGGTAAAGCCGCCGAAGCGAAGAACC
  28. S edge_2 GCGTACAGCAGGAGCAGGTATGTCGCAGAGCAACATCAATGTGTTCAGGGCCGCTGGCAAAGCCATCGCGCCGTGTACCGAGGCAATCAAATCAACCGA
  29. S edge_3 ACTCCGCGGTGAATCCATGGAACATAGAATGAGCGACCCCTGGACACCCGACCGTTCAACGCTCGCGCATGTCAGATTAAAAGTCATGCACAGATGCAT
  30. S edge_4 TGCGTGCACCACGACGGTGAACACGCCGGTGACGCCGCTGAGCCAGACCCTGGCGAAGGCGATGACGGGCAATGCCGACGAAGACGGTTCGGGCACGGT
  31. L edge_1 + edge_1 + 0M RC:i:0
  32. L edge_1 - edge_1 - 0M RC:i:0
  33. L edge_4 + edge_4 + 0M RC:i:217
  34. L edge_4 - edge_4 - 0M RC:i:207
  35. P contig_1 edge_1+ *
  36. P contig_2 edge_2+ *
  37. P contig_3 edge_3+ *
  38. P contig_4 edge_4+ *
  39.  
  40. barcode06
  41. H VN:Z:1.0
  42. S edge_1 TAAAACGGACTGCCGCTGGCCTATGAATCGGCTGATGGCAAGCGCAGTGAATTCCGTTACGACAATGTCGGGCGATTGATCGCCAACCGTAATGCGCAG
  43. S edge_2 CACCCGGCTGGCGGACGGCCGCATCGTGGTGACGTGGCAGGGTGACGGCACCTCCGGTACCGAGGTTTACATGCAGCTGTACGAGGCAGACGGTGTGCA
  44. S edge_3 AACGTATTGCTGAAGGTTAAGACTACTTTCTGCCTTTGCGAGAACAGCACCTCGCCGCCACGCCGCCTGCAGGCTGGCTTTCACGCCCTGCTGACCTGT
  45. S edge_4 CTGGTCATGTTGCCAGCACCGCTGATCATCCCTGGCTTCAGTAAAATCATGGCCTGGCATAACCGAACCCATCATCACAAAGGGCATGAGTGGCTGCGT
  46. L edge_1 + edge_1 + 0M RC:i:0
  47. L edge_1 - edge_1 - 0M RC:i:0
  48. L edge_2 + edge_2 + 0M RC:i:0
  49. L edge_2 - edge_2 - 0M RC:i:0
  50. L edge_4 + edge_4 + 0M RC:i:81
  51. P contig_1 edge_1+ *
  52. P contig_2 edge_2+ *
  53. P contig_4 edge_4+ *
  54. P contig_3 edge_3+ *
  55.  
  56. При этом в сборках из работы https://journals.asm.org/doi/full/10.1128/mra.00484-22 картина иная
  57. SRA из этой публикации https://trace.ncbi.nlm.nih.gov/Traces/?run=SRR18590331 https://trace.ncbi.nlm.nih.gov/Traces?run=SRR18590105
  58. H VN:Z:1.0
  59. S edge_1 CACATGCCCGGCGATGCGCGCGCCCTTGGCCCGCGCCGGTGTCACCAACCAGGCGGCCAGGATCAGCAGGGCGAAGGACATCAGCGCCAGCGGATCGAG
  60. L edge_1 + edge_1 + 0M RC:i:81
  61. P contig_1 edge_1+ *
  62.  
  63. H VN:Z:1.0
  64. S edge_1 GGTCGATCTGTGGCGTTTCGGCGCGCTCGAAGGCCGCGAGCAGTCGGCGTATGCGGCCTTGCGCGAGAATGCGTACGGCACGCCGCCGGCCTTGGTGCG
  65. L edge_1 + edge_1 + 0M RC:i:66
  66. P contig_1 edge_1+ *
  67.  
  68.  
  69.  
  70.  
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