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BlueManCZ

Error while emerging arpack

Nov 1st, 2019
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  1. These are the packages that would be merged, in order:
  2.  
  3. Calculating dependencies... done!
  4. [ebuild N ] sci-libs/arpack-3.1.5 USE="-doc -examples -mpi"
  5. [ebuild N ] sci-mathematics/octave-4.2.2 USE="X glpk gnuplot gui imagemagick opengl qhull qrupdate readline sparse zlib -curl -doc -fftw -graphicsmagick -hdf5 -java -openssl -portaudio -postscript -sndfile -static-libs"
  6.  
  7. Would you like to merge these packages? [Yes/No] y
  8.  
  9. >>> Verifying ebuild manifests
  10.  
  11. >>> Emerging (1 of 2) sci-libs/arpack-3.1.5::gentoo
  12. * Fetching files in the background.
  13. * To view fetch progress, run in another terminal:
  14. * tail -f /var/log/emerge-fetch.log
  15. * arpack-ng_3.1.5.tar.gz BLAKE2B SHA512 size ;-) ... [ ok ]
  16. * Using following Fortran compiler:
  17. * F77: x86_64-pc-linux-gnu-gfortran
  18. * FC: x86_64-pc-linux-gnu-gfortran
  19. >>> Unpacking source...
  20. >>> Unpacking arpack-ng_3.1.5.tar.gz to /var/tmp/portage/sci-libs/arpack-3.1.5/work
  21. >>> Source unpacked in /var/tmp/portage/sci-libs/arpack-3.1.5/work
  22. >>> Preparing source in /var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-ng-3.1.5 ...
  23. * Running elibtoolize in: arpack-ng-3.1.5/
  24. * Applying portage/1.2.0 patch ...
  25. * Applying sed/1.5.6 patch ...
  26. * Applying as-needed/2.4.2 patch ...
  27. * Applying target-nm/2.4.2 patch ...
  28. * Applying ppc64le/2.4.2 patch ...
  29. >>> Source prepared.
  30. >>> Configuring source in /var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-ng-3.1.5 ...
  31. Package lapack was not found in the pkg-config search path.
  32. Perhaps you should add the directory containing `lapack.pc'
  33. to the PKG_CONFIG_PATH environment variable
  34. Package 'lapack', required by 'virtual:world', not found
  35. >>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-3.1.5_build"
  36. * econf: updating arpack-ng-3.1.5/config.guess with /usr/share/gnuconfig/config.guess
  37. * econf: updating arpack-ng-3.1.5/config.sub with /usr/share/gnuconfig/config.sub
  38. /var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-ng-3.1.5/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --docdir=/usr/share/doc/arpack-3.1.5 --disable-static --with-blas=-L/usr/lib64/blas/reference -lblas --with-lapack= --disable-mpi
  39. checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
  40. checking whether build environment is sane... yes
  41. checking for a thread-safe mkdir -p... /bin/mkdir -p
  42. checking for gawk... gawk
  43. checking whether make sets $(MAKE)... yes
  44. checking whether make supports nested variables... yes
  45. checking whether to enable maintainer-specific portions of Makefiles... no
  46. checking for x86_64-pc-linux-gnu-g77... x86_64-pc-linux-gnu-gfortran
  47. checking whether the Fortran 77 compiler works... yes
  48. checking for Fortran 77 compiler default output file name... a.out
  49. checking for suffix of executables...
  50. checking whether we are cross compiling... no
  51. checking for suffix of object files... o
  52. checking whether we are using the GNU Fortran 77 compiler... yes
  53. checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
  54. checking build system type... x86_64-pc-linux-gnu
  55. checking host system type... x86_64-pc-linux-gnu
  56. checking how to print strings... printf
  57. checking for style of include used by make... GNU
  58. checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
  59. checking whether we are using the GNU C compiler... yes
  60. checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
  61. checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
  62. checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
  63. checking dependency style of x86_64-pc-linux-gnu-gcc... none
  64. checking for a sed that does not truncate output... /bin/sed
  65. checking for grep that handles long lines and -e... /bin/grep
  66. checking for egrep... /bin/grep -E
  67. checking for fgrep... /bin/grep -F
  68. checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
  69. checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
  70. checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
  71. checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
  72. checking whether ln -s works... yes
  73. checking the maximum length of command line arguments... 1572864
  74. checking whether the shell understands some XSI constructs... yes
  75. checking whether the shell understands "+="... yes
  76. checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
  77. checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
  78. checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
  79. checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
  80. checking how to recognize dependent libraries... pass_all
  81. checking for x86_64-pc-linux-gnu-dlltool... no
  82. checking for dlltool... no
  83. checking how to associate runtime and link libraries... printf %s\n
  84. checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
  85. checking for archiver @FILE support... @
  86. checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
  87. checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
  88. checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
  89. checking for sysroot... no
  90. checking for x86_64-pc-linux-gnu-mt... no
  91. checking for mt... no
  92. checking if : is a manifest tool... no
  93. checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
  94. checking for ANSI C header files... yes
  95. checking for sys/types.h... yes
  96. checking for sys/stat.h... yes
  97. checking for stdlib.h... yes
  98. checking for string.h... yes
  99. checking for memory.h... yes
  100. checking for strings.h... yes
  101. checking for inttypes.h... yes
  102. checking for stdint.h... yes
  103. checking for unistd.h... yes
  104. checking for dlfcn.h... yes
  105. checking for objdir... .libs
  106. checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
  107. checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
  108. checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
  109. checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
  110. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
  111. checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
  112. checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
  113. checking whether -lc should be explicitly linked in... no
  114. checking dynamic linker characteristics... GNU/Linux ld.so
  115. checking how to hardcode library paths into programs... immediate
  116. checking whether stripping libraries is possible... yes
  117. checking if libtool supports shared libraries... yes
  118. checking whether to build shared libraries... yes
  119. checking whether to build static libraries... no
  120. checking if libtool supports shared libraries... yes
  121. checking whether to build shared libraries... yes
  122. checking whether to build static libraries... no
  123. checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
  124. checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
  125. checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
  126. checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
  127. checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
  128. checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
  129. checking dynamic linker characteristics... (cached) GNU/Linux ld.so
  130. checking how to hardcode library paths into programs... immediate
  131. checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
  132. checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../.. -lgfortran -lm -lquadmath
  133. checking for dummy main to link with Fortran 77 libraries... none
  134. checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
  135. checking for sgemm_ in -L/usr/lib64/blas/reference -lblas ... yes
  136. checking for cheev_... no
  137. checking for cheev_ in -llapack... no
  138. checking for cheev_ in -llapack_rs6k... no
  139. configure: error: Cannot find LAPACK libraries
  140.  
  141. !!! Please attach the following file when seeking support:
  142. !!! /var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-3.1.5_build/config.log
  143. * ERROR: sci-libs/arpack-3.1.5::gentoo failed (configure phase):
  144. * econf failed
  145. *
  146. * Call stack:
  147. * ebuild.sh, line 125: Called src_configure
  148. * environment, line 2816: Called autotools-utils_src_configure
  149. * environment, line 751: Called econf '--docdir=/usr/share/doc/arpack-3.1.5' '--disable-static' '--with-blas=-L/usr/lib64/blas/reference -lblas ' '--with-lapack=' '--disable-mpi'
  150. * phase-helpers.sh, line 681: Called __helpers_die 'econf failed'
  151. * isolated-functions.sh, line 112: Called die
  152. * The specific snippet of code:
  153. * die "$@"
  154. *
  155. * If you need support, post the output of `emerge --info '=sci-libs/arpack-3.1.5::gentoo'`,
  156. * the complete build log and the output of `emerge -pqv '=sci-libs/arpack-3.1.5::gentoo'`.
  157. * The complete build log is located at '/var/tmp/portage/sci-libs/arpack-3.1.5/temp/build.log'.
  158. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/arpack-3.1.5/temp/environment'.
  159. * Working directory: '/var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-3.1.5_build'
  160. * S: '/var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-ng-3.1.5'
  161.  
  162. >>> Failed to emerge sci-libs/arpack-3.1.5, Log file:
  163.  
  164. >>> '/var/tmp/portage/sci-libs/arpack-3.1.5/temp/build.log'
  165.  
  166. * Messages for package sci-libs/arpack-3.1.5:
  167.  
  168. * ERROR: sci-libs/arpack-3.1.5::gentoo failed (configure phase):
  169. * econf failed
  170. *
  171. * Call stack:
  172. * ebuild.sh, line 125: Called src_configure
  173. * environment, line 2816: Called autotools-utils_src_configure
  174. * environment, line 751: Called econf '--docdir=/usr/share/doc/arpack-3.1.5' '--disable-static' '--with-blas=-L/usr/lib64/blas/reference -lblas ' '--with-lapack=' '--disable-mpi'
  175. * phase-helpers.sh, line 681: Called __helpers_die 'econf failed'
  176. * isolated-functions.sh, line 112: Called die
  177. * The specific snippet of code:
  178. * die "$@"
  179. *
  180. * If you need support, post the output of `emerge --info '=sci-libs/arpack-3.1.5::gentoo'`,
  181. * the complete build log and the output of `emerge -pqv '=sci-libs/arpack-3.1.5::gentoo'`.
  182. * The complete build log is located at '/var/tmp/portage/sci-libs/arpack-3.1.5/temp/build.log'.
  183. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/arpack-3.1.5/temp/environment'.
  184. * Working directory: '/var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-3.1.5_build'
  185. * S: '/var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-ng-3.1.5'
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