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SCOTTxRT

par creadoa mano

Aug 30th, 2019
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  1. !=============================================================
  2. !
  3. ! Parameter file generated by the Force Field ToolKit (ffTK)
  4. !
  5. ! For additional information, see:
  6. ! http://www.ks.uiuc.edu/Research/vmd/plugins/fftk
  7. ! http://www.ks.uiuc.edu/Research/fftk
  8. !
  9. ! Authors:
  10. ! Christopher G. Mayne
  11. ! Beckman Institute for Advanced Science and Technology
  12. ! University of Illinois, Urbana-Champaign
  13. ! http://www.ks.uiuc.edu/~mayne
  14. !
  15. ! James C. Gumbart
  16. ! Georgia Institute of Technology
  17. ! http://simbac.gatech.edu
  18. ! gumbart_physics.gatech.edu
  19. !
  20. ! If you use parameters developed using ffTK, please cite:
  21. ! C.G. Mayne, J. Saam, K. Schulten, E. Tajkhorshid, J.C. Gumbart. J. Comput. Chem. 2013, 34, 2757-2770.
  22. !
  23. !=============================================================
  24.  
  25. BONDS
  26. !V(bond) = Kb(b - b0)**2
  27. !
  28. !Kb: kcal/mole/A**2
  29. !b0: A
  30. !
  31. !atom type Kb b0
  32. !
  33. CG2O4 CG3RC1 189.000 1.560 ! ! ald , from CG2O4 CG3C41, penalty= 44
  34. CG2O5 CG3C51 330.000 1.500 ! ! ald , from CG2O5 CG321, penalty= 65
  35. CG331 CG301 0.000 0.000 !
  36. CG331 HGA3 0.000 0.000 !
  37. CG301 CG2DC1 0.000 0.000 !
  38. CG301 CG311 0.000 0.000 !
  39. CG301 CG321 0.000 0.000 !
  40. CG321 CG321 0.000 0.000 !
  41. CG321 HGA2 0.000 0.000 !
  42. CG321 CG2O5 0.000 0.000 !
  43. CG2O5 OG2D3 0.000 0.000 !
  44. CG2O5 CG2DC1 0.000 0.000 !
  45. CG2DC1 CG2DC1 0.000 0.000 !
  46. CG2DC1 HGA4 0.000 0.000 !
  47. CG2DC1 CG321 0.000 0.000 !
  48. CG321 CG311 0.000 0.000 !
  49. CG311 HGA1 0.000 0.000 !
  50. CG311 CG311 0.000 0.000 !
  51. CG311 CG3RC1 0.000 0.000 !
  52. CG3RC1 HGA1 0.000 0.000 !
  53. CG3RC1 CG3RC1 0.000 0.000 !
  54. CG3RC1 CG3C52 0.000 0.000 !
  55. CG3C52 CG3C52 0.000 0.000 !
  56. CG3C52 HGA2 0.000 0.000 !
  57. CG3C51 HGA1 0.000 0.000 !
  58. CG3C51 CG3RC1 0.000 0.000 !
  59. CG321 OG311 0.000 0.000 !
  60. OG311 HGP1 0.000 0.000 !
  61. CG3RC1 CG321 0.000 0.000 !
  62. CG2O4 OG2D1 0.000 0.000 !
  63. CG2O4 HGR52 0.000 0.000 !
  64. CG311 OG311 0.000 0.000 !
  65. CG3C52 CG3C51 0.000 0.000 !
  66.  
  67.  
  68.  
  69.  
  70. ANGLES
  71. !
  72. !V(angle) = Ktheta(Theta - Theta0)**2
  73. !
  74. !V(Urey-Bradley) = Kub(S - S0)**2
  75. !
  76. !Ktheta: kcal/mole/rad**2
  77. !Theta0: degrees
  78. !Kub: kcal/mole/A**2 (Urey-Bradley)
  79. !S0: A
  80. !
  81. !atom types Ktheta Theta0 Kub S0
  82. !
  83. !
  84. CG2DC1 CG2DC1 CG2O5 60.000 120.000 ! ! ald , from CG2DC1 CG2DC1 CG2O4, penalty= 0.5
  85. CG301 CG2DC1 CG321 48.000 123.500 ! ! ald , from CG321 CG2DC2 CG331, penalty= 2.7
  86. CG3RC1 CG2O4 OG2D1 70.000 134.000 ! ! ald , from CG3C41 CG2O4 OG2D1, penalty= 10.3
  87. CG3RC1 CG2O4 HGR52 65.000 116.000 ! ! ald , from CG321 CG2O4 HGR52, penalty= 13.8
  88. CG2DC1 CG2O5 CG321 35.000 116.000 ! ! ald , from CG2DC1 CG2O5 CG331, penalty= 0.9
  89. CG321 CG2O5 CG3C51 35.000 115.600 ! ! ald , from CG321 CG2O5 CG321, penalty= 10
  90. CG3C51 CG2O5 OG2D3 75.000 122.200 ! ! ald , from CG321 CG2O5 OG2D3, penalty= 10
  91. CG2DC1 CG301 CG311 32.000 112.200 ! ! ald , from CG2D1 CG301 CG311, penalty= 0.5
  92. CG2O5 CG321 OG311 112.000 111.000 ! ! ald , from CG2O5 CG311 OG311, penalty= 4
  93. CG311 CG321 CG3RC1 53.350 111.000 8.00 2.5610 ! ! ald , from CG321 CG321 CG3RC1, penalty= 0.6
  94. CG2O5 CG3C51 CG3C52 52.000 112.300 ! ! ald , from CG2O1 CG3C51 CG3C52, penalty= 3
  95. CG2O5 CG3C51 CG3RC1 52.000 112.300 ! ! ald , from CG2O1 CG3C51 CG3C52, penalty= 4.1
  96. CG2O5 CG3C51 HGA1 50.000 112.000 ! ! ald , from CG2O1 CG3C51 HGA1, penalty= 3
  97. CG2O4 CG3RC1 CG321 50.000 106.000 ! ! ald , from CG2O1 CG3C53 NG3P2, penalty= 68.5
  98. CG2O4 CG3RC1 CG3C51 52.000 112.300 ! ! ald , from CG2O1 CG3C51 CG3C52, penalty= 19.4
  99. CG2O4 CG3RC1 CG3RC1 70.000 113.700 ! ! ald , from CG3RC1 CG3RC1 NG2R61, penalty= 48
  100. CG301 CG331 HGA3 0.000 0.000 !
  101. HGA3 CG331 HGA3 0.000 0.000 !
  102. CG331 CG301 CG2DC1 0.000 0.000 !
  103. CG331 CG301 CG311 0.000 0.000 !
  104. CG331 CG301 CG321 0.000 0.000 !
  105. CG321 CG301 CG2DC1 0.000 0.000 !
  106. CG321 CG301 CG311 0.000 0.000 !
  107. CG301 CG321 CG321 0.000 0.000 !
  108. CG301 CG321 HGA2 0.000 0.000 !
  109. CG321 CG321 HGA2 0.000 0.000 !
  110. HGA2 CG321 HGA2 0.000 0.000 !
  111. CG321 CG321 CG2O5 0.000 0.000 !
  112. CG2O5 CG321 HGA2 0.000 0.000 !
  113. CG321 CG2O5 OG2D3 0.000 0.000 !
  114. OG2D3 CG2O5 CG2DC1 0.000 0.000 !
  115. CG2O5 CG2DC1 HGA4 0.000 0.000 !
  116. CG2DC1 CG2DC1 HGA4 0.000 0.000 !
  117. CG301 CG2DC1 CG2DC1 0.000 0.000 !
  118. CG2DC1 CG2DC1 CG321 0.000 0.000 !
  119. CG2DC1 CG321 CG321 0.000 0.000 !
  120. CG2DC1 CG321 HGA2 0.000 0.000 !
  121. CG321 CG321 CG311 0.000 0.000 !
  122. CG311 CG321 HGA2 0.000 0.000 !
  123. CG321 CG311 HGA1 0.000 0.000 !
  124. CG321 CG311 CG311 0.000 0.000 !
  125. CG321 CG311 CG3RC1 0.000 0.000 !
  126. HGA1 CG311 CG311 0.000 0.000 !
  127. HGA1 CG311 CG3RC1 0.000 0.000 !
  128. CG3RC1 CG311 CG311 0.000 0.000 !
  129. CG311 CG3RC1 HGA1 0.000 0.000 !
  130. CG311 CG3RC1 CG3RC1 0.000 0.000 !
  131. CG311 CG3RC1 CG3C52 0.000 0.000 !
  132. HGA1 CG3RC1 CG3RC1 0.000 0.000 !
  133. HGA1 CG3RC1 CG3C52 0.000 0.000 !
  134. CG3C52 CG3RC1 CG3RC1 0.000 0.000 !
  135. CG3RC1 CG3C52 CG3C52 0.000 0.000 !
  136. CG3RC1 CG3C52 HGA2 0.000 0.000 !
  137. CG3C52 CG3C52 HGA2 0.000 0.000 !
  138. HGA2 CG3C52 HGA2 0.000 0.000 !
  139. CG3C52 CG3C52 CG3C51 0.000 0.000 !
  140. CG3C51 CG3C52 HGA2 0.000 0.000 !
  141. CG3C52 CG3C51 HGA1 0.000 0.000 !
  142. CG3C52 CG3C51 CG3RC1 0.000 0.000 !
  143. HGA1 CG3C51 CG3RC1 0.000 0.000 !
  144. OG311 CG321 HGA2 0.000 0.000 !
  145. CG321 OG311 HGP1 0.000 0.000 !
  146. CG3RC1 CG3RC1 CG3C51 0.000 0.000 !
  147. CG3RC1 CG3RC1 CG321 0.000 0.000 !
  148. CG3C51 CG3RC1 CG321 0.000 0.000 !
  149. OG2D1 CG2O4 HGR52 0.000 0.000 !
  150. CG3RC1 CG321 HGA2 0.000 0.000 !
  151. CG321 CG311 OG311 0.000 0.000 !
  152. HGA1 CG311 OG311 0.000 0.000 !
  153. OG311 CG311 CG311 0.000 0.000 !
  154. CG311 OG311 HGP1 0.000 0.000 !
  155. CG301 CG311 CG311 0.000 0.000 !
  156. CG301 CG311 HGA1 0.000 0.000 !
  157. CG311 CG311 CG311 0.000 0.000 !
  158.  
  159.  
  160. DIHEDRALS
  161. !
  162. !V(dihedral) = Kchi(1 + cos(n(chi) - delta))
  163. !
  164. !Kchi: kcal/mole
  165. !n: multiplicity
  166. !delta: degrees
  167. !
  168. !atom types Kchi n delta
  169. !
  170. CG321 CG2DC1 CG301 CG331 0.1900 3 0.00 !
  171. CG2O5 CG3C51 CG3C52 CG3C52 0.1400 3 0.00 !
  172. CG301 CG2DC1 CG2DC1 HGA4 5.2000 2 180.00 !
  173. OG2D3 CG2O5 CG321 OG311 0.0000 2 0.00 !
  174. CG2O5 CG321 OG311 HGP1 0.3500 1 0.00 !
  175. CG2O5 CG321 OG311 HGP1 0.3700 2 0.00 !
  176. CG2O5 CG321 OG311 HGP1 0.0100 3 180.00 !
  177. OG311 CG311 CG321 CG3RC1 0.6000 1 0.00 !
  178. OG311 CG311 CG321 CG3RC1 0.7000 3 0.00 !
  179. CG2DC1 CG2DC1 CG2O5 OG2D3 1.4000 2 180.00 !
  180. CG2O5 CG3C51 CG3C52 HGA2 0.1400 3 0.00 !
  181. HGA1 CG3C51 CG3RC1 CG2O4 0.1400 3 0.00 !
  182. CG3C51 CG2O5 CG321 OG311 0.7500 1 0.00 !
  183. CG3C51 CG2O5 CG321 OG311 0.1800 2 180.00 !
  184. CG3C51 CG2O5 CG321 OG311 0.0650 3 0.00 !
  185. CG3C51 CG2O5 CG321 OG311 0.0300 6 0.00 !
  186. OG2D1 CG2O4 CG3RC1 CG3RC1 0.0995 2 0.00 !
  187. OG2D1 CG2O4 CG3RC1 CG3C51 0.0995 2 0.00 !
  188. CG2DC1 CG2O5 CG321 HGA2 0.1000 3 0.00 !
  189. HGA4 CG2DC1 CG2O5 CG321 0.0000 2 180.00 !
  190. CG2DC1 CG301 CG311 CG311 0.2000 3 0.00 !
  191. CG2O5 CG3C51 CG3RC1 CG2O4 0.1400 3 0.00 !
  192. CG311 CG321 CG3RC1 CG2O4 0.8000 4 180.00 !
  193. CG2O5 CG3C51 CG3RC1 CG3RC1 0.1500 3 0.00 !
  194. CG2O5 CG2DC1 CG2DC1 CG301 0.5600 1 180.00 !
  195. CG2O5 CG2DC1 CG2DC1 CG301 7.0000 2 180.00 !
  196. CG311 CG311 CG311 CG3RC1 0.1500 3 0.00 !
  197. CG311 CG311 CG321 CG3RC1 0.1500 3 0.00 !
  198. CG2O5 CG3C51 CG3RC1 CG321 0.1400 3 0.00 !
  199. HGR52 CG2O4 CG3RC1 CG321 0.0000 3 180.00 !
  200. CG2DC1 CG321 CG321 CG311 0.1900 3 0.00 !
  201. CG2O4 CG3RC1 CG3RC1 CG3C52 0.1500 3 0.00 !
  202. CG2DC1 CG2O5 CG321 CG321 0.4000 1 0.00 !
  203. CG2DC1 CG2O5 CG321 CG321 0.1700 2 180.00 !
  204. CG2DC1 CG2O5 CG321 CG321 0.1300 3 180.00 !
  205. CG2DC1 CG2O5 CG321 CG321 0.1000 6 180.00 !
  206. HGR52 CG2O4 CG3RC1 CG3RC1 0.0000 3 180.00 !
  207. CG311 CG321 CG3RC1 CG3RC1 0.1500 3 0.00 !
  208. CG2O5 CG321 CG321 CG301 0.2100 1 180.00 !
  209. CG2O5 CG321 CG321 CG301 0.3900 2 0.00 !
  210. CG2O5 CG321 CG321 CG301 0.3500 3 180.00 !
  211. CG2O5 CG321 CG321 CG301 0.1100 4 0.00 !
  212. CG2O5 CG321 CG321 CG301 0.0900 6 180.00 !
  213. OG2D1 CG2O4 CG3RC1 CG321 1.0500 1 180.00 !
  214. OG2D1 CG2O4 CG3RC1 CG321 0.4000 2 180.00 !
  215. OG2D1 CG2O4 CG3RC1 CG321 0.6000 3 180.00 !
  216. OG2D1 CG2O4 CG3RC1 CG321 0.1000 4 180.00 !
  217. HGR52 CG2O4 CG3RC1 CG3C51 0.0000 3 180.00 !
  218. CG311 CG321 CG3RC1 CG3C51 0.1580 3 0.00 !
  219. CG301 CG2DC1 CG321 CG321 0.1900 3 0.00 !
  220. CG2DC1 CG301 CG311 HGA1 0.1950 3 0.00 !
  221. HGA1 CG311 CG321 CG3RC1 0.1500 3 0.00 !
  222. CG301 CG2DC1 CG321 HGA2 0.1900 3 0.00 !
  223. CG2O4 CG3RC1 CG3RC1 HGA1 0.1500 3 0.00 !
  224. CG321 CG2O5 CG3C51 HGA1 0.1000 3 0.00 !
  225. CG301 CG311 CG311 OG311 0.1400 3 0.00 !
  226. CG2DC1 CG2DC1 CG2O5 CG321 1.4000 2 180.00 !
  227. CG2O5 CG2DC1 CG2DC1 CG321 0.5600 1 180.00 !
  228. CG2O5 CG2DC1 CG2DC1 CG321 7.0000 2 180.00 !
  229. CG3C51 CG2O5 CG321 HGA2 0.1000 3 0.00 !
  230. OG2D3 CG2O5 CG3C51 CG3RC1 0.7500 1 180.00 !
  231. OG2D3 CG2O5 CG3C51 CG3RC1 0.1800 2 180.00 !
  232. OG2D3 CG2O5 CG3C51 CG3RC1 0.0650 3 180.00 !
  233. OG2D3 CG2O5 CG3C51 CG3RC1 0.0300 6 0.00 !
  234. CG321 CG2DC1 CG301 CG311 0.1900 3 0.00 !
  235. CG321 CG2O5 CG3C51 CG3RC1 0.7500 1 0.00 !
  236. CG321 CG2O5 CG3C51 CG3RC1 0.1800 2 180.00 !
  237. CG321 CG2O5 CG3C51 CG3RC1 0.0650 3 0.00 !
  238. CG321 CG2O5 CG3C51 CG3RC1 0.0300 6 0.00 !
  239. OG2D3 CG2O5 CG3C51 CG3C52 0.7500 1 180.00 !
  240. OG2D3 CG2O5 CG3C51 CG3C52 0.1800 2 180.00 !
  241. OG2D3 CG2O5 CG3C51 CG3C52 0.0650 3 180.00 !
  242. OG2D3 CG2O5 CG3C51 CG3C52 0.0300 6 0.00 !
  243. CG321 CG2O5 CG3C51 CG3C52 0.7500 1 0.00 !
  244. CG321 CG2O5 CG3C51 CG3C52 0.1800 2 180.00 !
  245. CG3C52 CG3C51 CG3RC1 CG2O4 0.1400 3 0.00 !
  246. OG2D3 CG2O5 CG3C51 HGA1 0.0000 3 0.00 !
  247. HGA3 CG331 CG301 CG2DC1 0.0000 1 0.00 !
  248. HGA3 CG331 CG301 CG311 0.0000 1 0.00 !
  249. HGA3 CG331 CG301 CG321 0.0000 1 0.00 !
  250. CG331 CG301 CG2DC1 CG2DC1 0.0000 1 0.00 !
  251. CG311 CG301 CG2DC1 CG2DC1 0.0000 1 0.00 !
  252. CG321 CG301 CG2DC1 CG2DC1 0.0000 1 0.00 !
  253. CG321 CG301 CG2DC1 CG321 0.0000 1 0.00 !
  254. CG331 CG301 CG311 CG311 0.0000 1 0.00 !
  255. CG331 CG301 CG311 HGA1 0.0000 1 0.00 !
  256. CG321 CG301 CG311 CG311 0.0000 1 0.00 !
  257. CG321 CG301 CG311 HGA1 0.0000 1 0.00 !
  258. CG331 CG301 CG321 CG321 0.0000 1 0.00 !
  259. CG331 CG301 CG321 HGA2 0.0000 1 0.00 !
  260. CG2DC1 CG301 CG321 CG321 0.0000 1 0.00 !
  261. CG2DC1 CG301 CG321 HGA2 0.0000 1 0.00 !
  262. CG311 CG301 CG321 CG321 0.0000 1 0.00 !
  263. CG311 CG301 CG321 HGA2 0.0000 1 0.00 !
  264. CG301 CG321 CG321 HGA2 0.0000 1 0.00 !
  265. HGA2 CG321 CG321 CG2O5 0.0000 1 0.00 !
  266. HGA2 CG321 CG321 HGA2 0.0000 1 0.00 !
  267. CG321 CG321 CG2O5 OG2D3 0.0000 1 0.00 !
  268. HGA2 CG321 CG2O5 OG2D3 0.0000 1 0.00 !
  269. OG2D3 CG2O5 CG2DC1 HGA4 0.0000 1 0.00 !
  270. HGA4 CG2DC1 CG2DC1 CG321 0.0000 1 0.00 !
  271. CG2DC1 CG2DC1 CG321 CG321 0.0000 1 0.00 !
  272. CG2DC1 CG2DC1 CG321 HGA2 0.0000 1 0.00 !
  273. CG2DC1 CG321 CG321 HGA2 0.0000 1 0.00 !
  274. HGA2 CG321 CG321 CG311 0.0000 1 0.00 !
  275. CG321 CG321 CG311 HGA1 0.0000 1 0.00 !
  276. CG321 CG321 CG311 CG311 0.0000 1 0.00 !
  277. CG321 CG321 CG311 CG3RC1 0.0000 1 0.00 !
  278. HGA2 CG321 CG311 HGA1 0.0000 1 0.00 !
  279. HGA2 CG321 CG311 CG311 0.0000 1 0.00 !
  280. HGA2 CG321 CG311 CG3RC1 0.0000 1 0.00 !
  281. CG321 CG311 CG311 CG301 0.0000 1 0.00 !
  282. CG321 CG311 CG311 CG311 0.0000 1 0.00 !
  283. CG321 CG311 CG311 HGA1 0.0000 1 0.00 !
  284. HGA1 CG311 CG311 CG301 0.0000 1 0.00 !
  285. HGA1 CG311 CG311 CG311 0.0000 1 0.00 !
  286. HGA1 CG311 CG311 HGA1 0.0000 1 0.00 !
  287. CG3RC1 CG311 CG311 CG301 0.0000 1 0.00 !
  288. CG3RC1 CG311 CG311 HGA1 0.0000 1 0.00 !
  289. CG321 CG311 CG3RC1 HGA1 0.0000 1 0.00 !
  290. CG321 CG311 CG3RC1 CG3RC1 0.0000 1 0.00 !
  291. CG321 CG311 CG3RC1 CG3C52 0.0000 1 0.00 !
  292. HGA1 CG311 CG3RC1 HGA1 0.0000 1 0.00 !
  293. HGA1 CG311 CG3RC1 CG3RC1 0.0000 1 0.00 !
  294. HGA1 CG311 CG3RC1 CG3C52 0.0000 1 0.00 !
  295. CG311 CG311 CG3RC1 HGA1 0.0000 1 0.00 !
  296. CG311 CG311 CG3RC1 CG3RC1 0.0000 1 0.00 !
  297. CG311 CG311 CG3RC1 CG3C52 0.0000 1 0.00 !
  298. CG311 CG3RC1 CG3RC1 CG3C51 0.0000 1 0.00 !
  299. CG311 CG3RC1 CG3RC1 CG2O4 0.0000 1 0.00 !
  300. CG311 CG3RC1 CG3RC1 CG321 0.0000 1 0.00 !
  301. HGA1 CG3RC1 CG3RC1 CG3C51 0.0000 1 0.00 !
  302. HGA1 CG3RC1 CG3RC1 CG321 0.0000 1 0.00 !
  303. CG3C52 CG3RC1 CG3RC1 CG3C51 0.0000 1 0.00 !
  304. CG3C52 CG3RC1 CG3RC1 CG321 0.0000 1 0.00 !
  305. CG311 CG3RC1 CG3C52 CG3C52 0.0000 1 0.00 !
  306. CG311 CG3RC1 CG3C52 HGA2 0.0000 1 0.00 !
  307. HGA1 CG3RC1 CG3C52 CG3C52 0.0000 1 0.00 !
  308. HGA1 CG3RC1 CG3C52 HGA2 0.0000 1 0.00 !
  309. CG3RC1 CG3RC1 CG3C52 CG3C52 0.0000 1 0.00 !
  310. CG3RC1 CG3RC1 CG3C52 HGA2 0.0000 1 0.00 !
  311. CG3RC1 CG3C52 CG3C52 CG3C51 0.0000 1 0.00 !
  312. CG3RC1 CG3C52 CG3C52 HGA2 0.0000 1 0.00 !
  313. HGA2 CG3C52 CG3C52 CG3C51 0.0000 1 0.00 !
  314. HGA2 CG3C52 CG3C52 HGA2 0.0000 1 0.00 !
  315. CG3C52 CG3C52 CG3C51 HGA1 0.0000 1 0.00 !
  316. CG3C52 CG3C52 CG3C51 CG3RC1 0.0000 1 0.00 !
  317. HGA2 CG3C52 CG3C51 HGA1 0.0000 1 0.00 !
  318. HGA2 CG3C52 CG3C51 CG3RC1 0.0000 1 0.00 !
  319. CG3C52 CG3C51 CG3RC1 CG3RC1 0.0000 1 0.00 !
  320. CG3C52 CG3C51 CG3RC1 CG321 0.0000 1 0.00 !
  321. HGA1 CG3C51 CG3RC1 CG3RC1 0.0000 1 0.00 !
  322. HGA1 CG3C51 CG3RC1 CG321 0.0000 1 0.00 !
  323. CG2O5 CG321 OG311 HGP1 0.0000 1 0.00 !
  324. HGA2 CG321 OG311 HGP1 0.0000 1 0.00 !
  325. CG3RC1 CG3RC1 CG321 HGA2 0.0000 1 0.00 !
  326. CG3C51 CG3RC1 CG321 HGA2 0.0000 1 0.00 !
  327. CG2O4 CG3RC1 CG321 HGA2 0.0000 1 0.00 !
  328. HGA2 CG321 CG311 OG311 0.0000 1 0.00 !
  329. CG321 CG311 OG311 HGP1 0.0000 1 0.00 !
  330. HGA1 CG311 OG311 HGP1 0.0000 1 0.00 !
  331. CG311 CG311 OG311 HGP1 0.0000 1 0.00 !
  332. OG311 CG311 CG311 CG301 0.0000 1 0.00 !
  333. OG311 CG311 CG311 CG311 0.0000 1 0.00 !
  334. OG311 CG311 CG311 HGA1 0.0000 1 0.00 !
  335.  
  336.  
  337.  
  338.  
  339. IMPROPER
  340. !
  341. !V(improper) = Kpsi(psi - psi0)**2
  342. !
  343. !Kpsi: kcal/mole/rad**2
  344. !psi0: degrees
  345. !note that the second column of numbers (0) is ignored
  346. !
  347. !atom types Kpsi psi0
  348. !
  349. CG2O4 CG3RC1 OG2D1 HGR52 50.0000 0 0.00 ! ! ald , from CG2O4 CG321 OG2D1 HGR52, penalty= 7.5
  350. CG2O5 CG2DC1 CG321 OG2D3 88.0000 0 0.00 ! ! ald , from CG2O5 CG2DC2 CG331 OG2D3, penalty= 0.6
  351. CG2O5 CG321 CG3C51 OG2D3 70.0000 0 0.00 ! ! ald , from CG2O5 CG321 CG321 OG2D3, penalty= 6.5
  352.  
  353. NONBONDED nbxmod 5 atom cdiel shift vatom vdistance vswitch -
  354. cutnb 14.0 ctofnb 12.0 ctonnb 10.0 eps 1.0 e14fac 1.0 wmin 1.5
  355. !
  356. !V(Lennard-Jones) = Eps,i,j[(Rmin,i,j/ri,j)**12 - 2(Rmin,i,j/ri,j)**6]
  357. !
  358. !epsilon: kcal/mole, Eps,i,j = sqrt(eps,i * eps,j)
  359. !Rmin/2: A, Rmin,i,j = Rmin/2,i + Rmin/2,j
  360. !
  361. !atom ignored epsilon Rmin/2 ignored eps,1-4 Rmin/2,1-4
  362. !
  363. CG2DC1 0.0 -0.068000 2.090000 !
  364. CG2O4 0.0 -0.060000 1.800000 !
  365. CG2O5 0.0 -0.090000 2.000000 !
  366. CG301 0.0 -0.032000 2.000000 0.0 -0.010000 1.900000 !
  367. CG311 0.0 -0.032000 2.000000 0.0 -0.010000 1.900000 !
  368. CG321 0.0 -0.056000 2.010000 0.0 -0.010000 1.900000 !
  369. CG331 0.0 -0.032000 2.000000 0.0 -0.010000 1.900000 !
  370. CG3C51 0.0 -0.036000 2.010000 0.0 -0.010000 1.900000 !
  371. CG3C52 0.0 -0.060000 2.020000 0.0 -0.010000 1.900000 !
  372. CG3RC1 0.0 -0.032000 2.000000 0.0 -0.010000 1.900000 !
  373. HGA1 0.0 -0.045000 1.340000 !
  374. HGA2 0.0 -0.035000 1.340000 !
  375. HGA3 0.0 -0.024000 1.340000 !
  376. HGA4 0.0 -0.031000 1.250000 !
  377. HGP1 0.0 -0.046000 0.224500 !
  378. HGR52 0.0 -0.046000 0.900000 !
  379. OG2D1 0.0 -0.120000 1.700000 0.0 -0.120000 1.400000 !
  380. OG2D3 0.0 -0.050000 1.700000 0.0 -0.120000 1.400000 !
  381. OG311 0.0 -0.192100 1.765000 !
  382.  
  383. END
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